Difference between revisions of "RXN-9535"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10701 RXN-10701] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** 3-ketoacyl-_thi...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10701 RXN-10701] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** thiolase
+
** polyketide_synthase
−
** 3-ketoacyl-_thiolase
+
** 3-oxoacyl-synthase
−
** acetyl-_c-acetyltransferase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
 +
** β-ketoacyl-ACP synthase I
 +
** β-ketoacyl-acyl carrier protein synthetase
 +
** β-ketoacyl-[acyl carrier protein] synthase
 +
** condensing enzyme
 +
** β-ketoacyl acyl carrier protein synthase
 +
** 3-oxoacyl-[acyl-carrier-protein] synthase
 +
** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[CPD-11528]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-11529]][c]
+
** 1 [[MALONYL-ACP]][c] '''+''' 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 OPC4-3-ketoacyl-CoA[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 jasmonoyl-CoA[c]
+
** 1 a malonyl-[acp][c] '''+''' 1 a dodecanoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-myristoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15327]]
+
* Gene: [[Tiso_gene_500]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_3856]]
+
* Gene: [[Tiso_gene_13394]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10116]]
+
* Gene: [[Tiso_gene_15991]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_14485]]
−
* [[Tiso_gene_3855]]
+
** Source: [[orthology-synechocystis]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_135]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_17451]]
+
* Gene: [[Tiso_gene_19302]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-synechocystis]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_10876]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5939]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''15''' reactions found over '''19''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thiolase}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: common name=3-ketoacyl-_thiolase}}
+
{{#set: common name=3-oxoacyl-synthase}}
−
{{#set: common name=acetyl-_c-acetyltransferase}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: ec number=EC-2.3.1.16}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: gene associated=Tiso_gene_15327|Tiso_gene_3856|Tiso_gene_10116|Tiso_gene_3855|Tiso_gene_17451}}
+
{{#set: ec number=EC-2.3.1.41}}
−
{{#set: in pathway=PWY-735}}
+
{{#set: common name=β-ketoacyl-ACP synthase I|β-ketoacyl-acyl carrier protein synthetase|β-ketoacyl-[acyl carrier protein] synthase|condensing enzyme|β-ketoacyl acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: gene associated=Tiso_gene_500|Tiso_gene_13394|Tiso_gene_15991|Tiso_gene_14485|Tiso_gene_135|Tiso_gene_19302|Tiso_gene_10876|Tiso_gene_5939|Tiso_gene_136}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: in pathway=PWY-5971}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:32, 21 March 2018

Reaction RXN-9535

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):
    • β-ketoacyl-ACP synthase I
    • β-ketoacyl-acyl carrier protein synthetase
    • β-ketoacyl-[acyl carrier protein] synthase
    • condensing enzyme
    • β-ketoacyl acyl carrier protein synthase
    • 3-oxoacyl-[acyl-carrier-protein] synthase
    • acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • "β-ketoacyl-[acyl carrier protein] synthase" cannot be used as a page name in this wiki.
  • "3-oxoacyl-[acyl-carrier-protein] synthase" cannot be used as a page name in this wiki.
  • "acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9535&oldid=42281"