Difference between revisions of "RXN-9535"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=UMP UMP] == * smiles: ** C(OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2)) * common name:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=UMP UMP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] ==
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* smiles:
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* direction:
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** C(OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2))
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** UMP
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** polyketide_synthase
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* inchi key:
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** 3-oxoacyl-synthase
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** InChIKey=DJJCXFVJDGTHFX-XVFCMESISA-L
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 322.168   
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
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** uridylate
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** β-ketoacyl-ACP synthase I
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** 5'-UMP
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** β-ketoacyl-acyl carrier protein synthetase
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** uridine 5'-phosphate
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** β-ketoacyl-[acyl carrier protein] synthase
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** 5'-uridylic acid (8CI)(9CI)
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** condensing enzyme
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** uridine monophosphate
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** β-ketoacyl acyl carrier protein synthase
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** uridine 5'-monophosphate
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** 3-oxoacyl-[acyl-carrier-protein] synthase
 +
** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[UMPKf]]
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* With identifiers:
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* [[RXN-14025]]
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** 1 [[MALONYL-ACP]][c] '''+''' 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
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* [[UMPP]]
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* With common name(s):
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* [[RXN-12002]]
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** 1 a malonyl-[acp][c] '''+''' 1 a dodecanoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-myristoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
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== Reaction(s) known to produce the compound ==
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* [[orPDC]]
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== Genes associated with this reaction  ==
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* [[UTPPH]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[GTUP]]
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* Gene: [[Tiso_gene_500]]
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* [[AUPT]]
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** Source: [[annotation-in-silico_annotation]]
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* [[OROTPDECARB-RXN]]
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*** Assignment: EC-NUMBER
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* [[UTUP]]
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* Gene: [[Tiso_gene_13394]]
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* [[DGTUP]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-11347]]
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*** Assignment: EC-NUMBER
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* [[DUTUP]]
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* Gene: [[Tiso_gene_15991]]
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* [[DCTUP]]
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** Source: [[orthology-athaliana]]
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* [[2.7.8.15-RXN]]
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** Source: [[orthology-athaliana]]
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* [[DATUP]]
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** Source: [[orthology-esiliculosus]]
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* [[RXN-14139]]
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* Gene: [[Tiso_gene_14485]]
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* [[RXN-12197]]
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** Source: [[orthology-synechocystis]]
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* [[UPH]]
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** Source: [[orthology-esiliculosus]]
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* [[DTTUP]]
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* Gene: [[Tiso_gene_135]]
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* [[RXN-12199]]
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** Source: [[annotation-in-silico_annotation]]
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* [[URIDINEKIN-RXN]]
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*** Assignment: EC-NUMBER
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* [[ITUP]]
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* Gene: [[Tiso_gene_19302]]
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* [[URACIL-PRIBOSYLTRANS-RXN]]
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** Source: [[orthology-synechocystis]]
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* [[PHOSNACMURPENTATRANS-RXN]]
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** Source: [[orthology-esiliculosus]]
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== Reaction(s) of unknown directionality ==
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* Gene: [[Tiso_gene_10876]]
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* [[RXN-8975]]
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** Source: [[annotation-in-silico_annotation]]
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* [[URKI-RXN]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5939]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 58-97-9
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{{#set: direction=LEFT-TO-RIGHT}}
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* BIGG : ump
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{{#set: common name=polyketide_synthase}}
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* PUBCHEM:
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{{#set: common name=3-oxoacyl-synthase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=1778309 1778309]
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{{#set: ec number=EC-2.3.1.86}}
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* HMDB : HMDB00288
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{{#set: ec number=EC-2.3.1.85}}
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* LIGAND-CPD:
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{{#set: ec number=EC-2.3.1.41}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00105 C00105]
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{{#set: common name=β-ketoacyl-ACP synthase I|β-ketoacyl-acyl carrier protein synthetase|β-ketoacyl-[acyl carrier protein] synthase|condensing enzyme|β-ketoacyl acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)}}
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* CHEMSPIDER:
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{{#set: gene associated=Tiso_gene_500|Tiso_gene_13394|Tiso_gene_15991|Tiso_gene_14485|Tiso_gene_135|Tiso_gene_19302|Tiso_gene_10876|Tiso_gene_5939|Tiso_gene_136}}
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** [http://www.chemspider.com/Chemical-Structure.1399139.html 1399139]
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{{#set: in pathway=PWY-5971}}
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* CHEBI:
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{{#set: reconstruction category=orthology|manual|annotation}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57865 57865]
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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* METABOLIGHTS : MTBLC57865
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: smiles=C(OP(=O)([O-])[O-])C1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2))}}
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−
{{#set: common name=UMP}}
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−
{{#set: inchi key=InChIKey=DJJCXFVJDGTHFX-XVFCMESISA-L}}
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−
{{#set: molecular weight=322.168    }}
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−
{{#set: common name=uridylate|5'-UMP|uridine 5'-phosphate|5'-uridylic acid (8CI)(9CI)|uridine monophosphate|uridine 5'-monophosphate}}
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−
{{#set: consumed by=UMPKf|RXN-14025|UMPP|RXN-12002}}
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−
{{#set: produced by=orPDC|UTPPH|GTUP|AUPT|OROTPDECARB-RXN|UTUP|DGTUP|RXN-11347|DUTUP|DCTUP|2.7.8.15-RXN|DATUP|RXN-14139|RXN-12197|UPH|DTTUP|RXN-12199|URIDINEKIN-RXN|ITUP|URACIL-PRIBOSYLTRANS-RXN|PHOSNACMURPENTATRANS-RXN}}
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−
{{#set: reversible reaction associated=RXN-8975|URKI-RXN}}
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Latest revision as of 20:32, 21 March 2018

Reaction RXN-9535

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):
    • β-ketoacyl-ACP synthase I
    • β-ketoacyl-acyl carrier protein synthetase
    • β-ketoacyl-[acyl carrier protein] synthase
    • condensing enzyme
    • β-ketoacyl acyl carrier protein synthase
    • 3-oxoacyl-[acyl-carrier-protein] synthase
    • acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • "β-ketoacyl-[acyl carrier protein] synthase" cannot be used as a page name in this wiki.
  • "3-oxoacyl-[acyl-carrier-protein] synthase" cannot be used as a page name in this wiki.
  • "acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" cannot be used as a page name in this wiki.



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