Difference between revisions of "RXN-9537"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like_chlorop...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** beta-glucosidase-like_chloroplastic
+
** polyketide_synthase
−
** ORF
+
−
** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
+
−
** beta_glucosidase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
 +
** (3R)-hydroxymyristoyl-ACP dehydratase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[LINAMARIN]][c] '''=>''' 1 [[2-HYDROXY-2-METHYLPROPANENITRILE]][c] '''+''' 1 [[Glucopyranose]][c]
+
** 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 linamarin[c] '''=>''' 1 2-hydroxy-2-methylpropanenitrile[c] '''+''' 1 D-glucopyranose[c]
+
** 1 a (3R)-3-hydroxymyristoyl-[acp][c] '''=>''' 1 a trans tetradec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3467]]
+
* Gene: [[Tiso_gene_135]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_136]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_6497]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_6884]]
−
* [[Tiso_gene_15067]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_13394]]
−
* [[Tiso_gene_2344]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_8669]]
+
* Gene: [[Tiso_gene_9421]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_10876]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10001]]
+
* Gene: [[Tiso_gene_6885]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-synechocystis]]
−
* [[Tiso_gene_6188]]
+
* Gene: [[Tiso_gene_500]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_5836]]
+
* Gene: [[Tiso_gene_6671]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6187]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6007]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2843]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13305]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13306]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15066]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-3121]], linamarin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3121 PWY-3121]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-synechocystis]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[experimental_annotation]]
+
* Category: [[manual]]
−
*** [[in-silico_annotation]]
+
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=beta-glucosidase-like_chloroplastic}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: common name=beta_glucosidase}}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: ec number=EC-3.2.1.21}}
+
{{#set: common name=(3R)-hydroxymyristoyl-ACP dehydratase}}
−
{{#set: gene associated=Tiso_gene_3467|Tiso_gene_6497|Tiso_gene_15067|Tiso_gene_2344|Tiso_gene_8669|Tiso_gene_10001|Tiso_gene_6188|Tiso_gene_5836|Tiso_gene_6187|Tiso_gene_6007|Tiso_gene_2843|Tiso_gene_13305|Tiso_gene_13306|Tiso_gene_15066}}
+
{{#set: gene associated=Tiso_gene_135|Tiso_gene_136|Tiso_gene_6884|Tiso_gene_13394|Tiso_gene_9421|Tiso_gene_10876|Tiso_gene_6885|Tiso_gene_500|Tiso_gene_6671}}
−
{{#set: in pathway=PWY-3121|PWY-7091}}
+
{{#set: in pathway=PWY-5971|PWY-5994}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=orthology-creinhardtii|manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|annotation-experimental_annotation}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:18, 21 March 2018

Reaction RXN-9537

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9537&oldid=40782"