Difference between revisions of "RXN-9540"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] == * direction: ** L...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9540 RXN-9540] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-palmitoyl-[acyl-carrier...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9540 RXN-9540] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** 3-oxo-palmitoyl-[acyl-carrier protein] reductase
 +
** polyketide_synthase
 +
** 3-oxoacyl-(acyl-carrier-protein)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Ubiquinones]][c] '''+''' 1 [[SUC]][c] '''=>''' 1 [[FUM]][c] '''+''' 1 [[Ubiquinols]][c]
+
** 1 [[NADPH]][c] '''+''' 1 [[3-oxo-palmitoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-Hydroxypalmitoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a ubiquinone[c] '''+''' 1 succinate[c] '''=>''' 1 fumarate[c] '''+''' 1 an ubiquinol[c]
+
** 1 NADPH[c] '''+''' 1 a 3-oxo-palmitoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxypalmitoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_9885]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13083]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4302 PWY-4302]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-3781]], aerobic respiration I (cytochrome c): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3781 PWY-3781]
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7279 PWY-7279]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY0-1329]], succinate to cytochrome bo oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1329 PWY0-1329]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY0-1353]], succinate to cytochrome bd oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1353 PWY0-1353]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[primary_network]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13713 13713]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02164 R02164]
 
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T50081 T50081]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46878 T46878]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41753 T41753]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T37633 T37633]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11245 T11245]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11229 T11229]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11218 T11218]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78180 S78180]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78179 S78179]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78178 S78178]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74810 S74810]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62756 S62756]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62755 S62755]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59115 S59115]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59114 S59114]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56817 S56817]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S34793 S34793]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26978 S26978]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S25968 S25968]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=RDBYIS RDBYIS]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PT0094 PT0094]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0336 JX0336]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38895 I38895]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81388 D81388]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D71712 D71712]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D32394 D32394]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C32394 C32394]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B58930 B58930]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B32394 B32394]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56660 A56660]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A45159 A45159]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A42792 A42792]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P35720 P35720]
 
−
** [http://www.uniprot.org/uniprot/Q26266 Q26266]
 
−
** [http://www.uniprot.org/uniprot/P21913 P21913]
 
−
** [http://www.uniprot.org/uniprot/Q9ZZR2 Q9ZZR2]
 
−
** [http://www.uniprot.org/uniprot/P21911 P21911]
 
−
** [http://www.uniprot.org/uniprot/Q9ZEA1 Q9ZEA1]
 
−
** [http://www.uniprot.org/uniprot/Q9PI67 Q9PI67]
 
−
** [http://www.uniprot.org/uniprot/P21912 P21912]
 
−
** [http://www.uniprot.org/uniprot/P31040 P31040]
 
−
** [http://www.uniprot.org/uniprot/Q9CQA3 Q9CQA3]
 
−
** [http://www.uniprot.org/uniprot/P21801 P21801]
 
−
** [http://www.uniprot.org/uniprot/P35721 P35721]
 
−
** [http://www.uniprot.org/uniprot/P32420 P32420]
 
−
** [http://www.uniprot.org/uniprot/Q00711 Q00711]
 
−
** [http://www.uniprot.org/uniprot/P47052 P47052]
 
−
** [http://www.uniprot.org/uniprot/P48932 P48932]
 
−
** [http://www.uniprot.org/uniprot/P48934 P48934]
 
−
** [http://www.uniprot.org/uniprot/P48935 P48935]
 
−
** [http://www.uniprot.org/uniprot/P48933 P48933]
 
−
** [http://www.uniprot.org/uniprot/P73723 P73723]
 
−
** [http://www.uniprot.org/uniprot/P80481 P80481]
 
−
** [http://www.uniprot.org/uniprot/P80482 P80482]
 
−
** [http://www.uniprot.org/uniprot/P80480 P80480]
 
−
** [http://www.uniprot.org/uniprot/Q9T584 Q9T584]
 
−
** [http://www.uniprot.org/uniprot/P80479 P80479]
 
−
** [http://www.uniprot.org/uniprot/P80478 P80478]
 
−
** [http://www.uniprot.org/uniprot/Q09508 Q09508]
 
−
** [http://www.uniprot.org/uniprot/Q59659 Q59659]
 
−
** [http://www.uniprot.org/uniprot/Q9UTJ7 Q9UTJ7]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.3.5.1}}
+
{{#set: common name=3-oxo-palmitoyl-[acyl-carrier protein] reductase}}
−
{{#set: in pathway=PWY-4302|PWY-3781|PWY-7279|PWY0-1329|PWY0-1353|PWY66-398}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: reconstruction category=manual}}
+
{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
−
{{#set: reconstruction source=primary_network}}
+
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-1.1.1.100}}
 +
{{#set: gene associated=Tiso_gene_9885|Tiso_gene_13083|Tiso_gene_10876|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_500}}
 +
{{#set: in pathway=PWY-5971|PWY-5994}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:58, 21 March 2018

Reaction RXN-9540

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxo-palmitoyl-[acyl-carrier protein] reductase
    • polyketide_synthase
    • 3-oxoacyl-(acyl-carrier-protein)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"3-oxo-palmitoyl-[acyl-carrier protein] reductase" cannot be used as a page name in this wiki.






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9540&oldid=44983"