Difference between revisions of "RXN-9623"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MN+2 MN+2] == * smiles: ** [Mn++] * inchi key: ** InChIKey=WAEMQWOKJMHJLA-UHFFFAOYSA-N * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF **...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MN+2 MN+2] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] ==
−
* smiles:
+
* direction:
−
** [Mn++]
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=WAEMQWOKJMHJLA-UHFFFAOYSA-N
+
 
* common name:
 
* common name:
−
** Mn2+
+
** polyketide_synthase
−
* molecular weight:
+
** ORF
−
** 54.938   
+
** long_chain_acyl-_synthetase
 +
** acyl-_synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** manganese ion
 
−
** Mn(II)
 
−
** Mn+2
 
−
** Mn++
 
−
** manganese (II) ion
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[TransportSeed_MN+2]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[ATP]][c] '''+''' 1 [[PALMITATE]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[AMP]][c]
−
* [[TransportSeed_MN+2]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 ATP[c] '''+''' 1 palmitate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 AMP[c]
−
* [[ExchangeSeed_MN+2]]
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_9394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12275]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7855]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4191]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
== Pathways  ==
 +
* [[PWY-5972]], stearate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 7439-96-5
+
* RHEA:
−
* CAS : 16397-91-4
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30754 30754]
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=27854 27854]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01280 R01280]
−
* HMDB : HMDB01333
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* LIGAND-CPD:
+
{{#set: common name=polyketide_synthase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C19610 C19610]
+
{{#set: common name=ORF}}
−
* CHEMSPIDER:
+
{{#set: common name=long_chain_acyl-_synthetase}}
−
** [http://www.chemspider.com/Chemical-Structure.25916.html 25916]
+
{{#set: common name=acyl-_synthetase}}
−
* CHEBI:
+
{{#set: ec number=EC-6.2.1.3}}
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=29035 29035]
+
{{#set: gene associated=Tiso_gene_9394|Tiso_gene_13394|Tiso_gene_12275|Tiso_gene_10876|Tiso_gene_7855|Tiso_gene_348|Tiso_gene_136|Tiso_gene_135|Tiso_gene_500|Tiso_gene_4191}}
−
* BIGG : mn2
+
{{#set: in pathway=PWY-5972|PWY-5971}}
−
{{#set: smiles=[Mn++]}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: inchi key=InChIKey=WAEMQWOKJMHJLA-UHFFFAOYSA-N}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
−
{{#set: common name=Mn2+}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: molecular weight=54.938    }}
+
−
{{#set: common name=manganese ion|Mn(II)|Mn+2|Mn++|manganese (II) ion}}
+
−
{{#set: consumed by=TransportSeed_MN+2}}
+
−
{{#set: produced by=TransportSeed_MN+2}}
+
−
{{#set: consumed or produced by=ExchangeSeed_MN+2}}
+

Latest revision as of 20:14, 21 March 2018

Reaction RXN-9623

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • ORF
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 palmitate[c] + 1 coenzyme A[c] => 1 diphosphate[c] + 1 palmitoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5972, stearate biosynthesis I (animals and fungi): PWY-5972
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9623&oldid=40376"