Difference between revisions of "RXN-9634"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_10077 == * left end position: ** 11427 * transcription direction: ** NEGATIVE * right end position: ** 13024 * centisome position: ** 74.57...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_10077 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] ==
−
* left end position:
+
* direction:
−
** 11427
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** polyketide_synthase
−
* right end position:
+
* ec number:
−
** 13024
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
−
** 74.57417   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[R03845]]
+
* With identifiers:
−
** [[pantograph]]-[[synechocystis]]
+
** 1 [[R-3-hydroxystearoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c]
−
* [[RXN-5285]]
+
* With common name(s):
−
** in-silico_annotation
+
** 1 a (3R)-3-hydroxystearoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-octadec-2-enoyl-[acp][c]
−
***ec-number
+
 
−
** experimental_annotation
+
== Genes associated with this reaction  ==
−
***ec-number
+
Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_10876]]
−
* [[RXN1F-10]]
+
** Source: [[annotation-in-silico_annotation]]
−
** in-silico_annotation
+
*** Assignment: EC-NUMBER
−
***ec-number
+
* Gene: [[Tiso_gene_500]]
−
** experimental_annotation
+
** Source: [[annotation-in-silico_annotation]]
−
***ec-number
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_136]]
−
== Pathways associated ==
+
** Source: [[annotation-in-silico_annotation]]
−
* [[CHLOROPHYLL-SYN]]
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6884]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=11427}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=NEGATIVE}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: right end position=13024}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: centisome position=74.57417    }}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: reaction associated=R03845|RXN-5285|RXN1F-10}}
+
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_500|Tiso_gene_136|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_6884}}
−
{{#set: pathway associated=CHLOROPHYLL-SYN}}
+
{{#set: in pathway=PWY-5989|PWY3O-355}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:21, 21 March 2018

Reaction RXN-9634

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 5 reactions found over 6 reactions in the full pathway
  • PWY3O-355, stearate biosynthesis III (fungi): PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9634&oldid=41035"