Difference between revisions of "RXN-9634"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == * direction: ** REVERSIBLE * common name: ** isopentenyl-diphosphate_de...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** isopentenyl-diphosphate_delta-isomerase
+
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.3.3.2 EC-5.3.3.2]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
+
** 1 [[R-3-hydroxystearoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 isopentenyl diphosphate[c] '''<=>''' 1 dimethylallyl diphosphate[c]
+
** 1 a (3R)-3-hydroxystearoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-octadec-2-enoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_8653]]
+
* Gene: [[Tiso_gene_10876]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6884]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
+
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
+
* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
+
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
+
−
** '''4''' reactions found over '''8''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[manual]]
 
* Category: [[manual]]
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* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23284 23284]
+
{{#set: common name=polyketide_synthase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-2.3.1.86}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
+
{{#set: ec number=EC-4.2.1.59}}
−
* UNIPROT:
+
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_500|Tiso_gene_136|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_6884}}
−
** [http://www.uniprot.org/uniprot/P15496 P15496]
+
{{#set: in pathway=PWY-5989|PWY3O-355}}
−
** [http://www.uniprot.org/uniprot/Q10132 Q10132]
+
−
** [http://www.uniprot.org/uniprot/Q38929 Q38929]
+
−
** [http://www.uniprot.org/uniprot/Q42553 Q42553]
+
−
** [http://www.uniprot.org/uniprot/P93355 P93355]
+
−
** [http://www.uniprot.org/uniprot/O81691 O81691]
+
−
** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
+
−
** [http://www.uniprot.org/uniprot/O81660 O81660]
+
−
** [http://www.uniprot.org/uniprot/O81659 O81659]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=isopentenyl-diphosphate_delta-isomerase}}
+
−
{{#set: ec number=EC-5.3.3.2}}
+
−
{{#set: gene associated=Tiso_gene_8653}}
+
−
{{#set: in pathway=PWY-6174|PWY-922|PWY-6859|NONMEVIPP-PWY|PWY-7102|PWY-7391|PWY-5123|PWY-7560|PWY-6383|PWY-7524}}
+
 
{{#set: reconstruction category=manual|annotation}}
 
{{#set: reconstruction category=manual|annotation}}
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:21, 21 March 2018

Reaction RXN-9634

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 5 reactions found over 6 reactions in the full pathway
  • PWY3O-355, stearate biosynthesis III (fungi): PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9634&oldid=41035"