Difference between revisions of "RXN-9650"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAMPG GAMPG] == * direction: ** LEFT-TO-RIGHT * common name: ** GTP:alpha-D-mannose-1-phosphate gua...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec nu...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAMPG GAMPG] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** GTP:alpha-D-mannose-1-phosphate guanylyltransferase
+
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.1.1.13 EC-2.1.1.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[MANNOSE-1P]][c] '''+''' 1.0 [[GTP]][c] '''+''' 1.0 [[PROTON]][c] '''=>''' 1.0 [[PPI]][c] '''+''' 1.0 [[GDP-MANNOSE]][c]
+
** 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[THF-GLU-N]][c] '''+''' 1 [[MET]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 α-D-mannose 1-phosphate[c] '''+''' 1.0 GTP[c] '''+''' 1.0 H+[c] '''=>''' 1.0 diphosphate[c] '''+''' 1.0 GDP-α-D-mannose[c]
+
** 1 an N5-methyl-tetrahydrofolate[c] '''+''' 1 L-homocysteine[c] '''=>''' 1 a tetrahydrofolate[c] '''+''' 1 L-methionine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14704]]
+
* Gene: [[Tiso_gene_1602]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
 +
** '''7''' reactions found over '''12''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=HSERMETANA-PWY HSERMETANA-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine: [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLHOMOCYSCAT-PWY ADENOSYLHOMOCYSCAT-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11172 11172]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q57195 Q57195]
 +
** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
 +
** [http://www.uniprot.org/uniprot/O33259 O33259]
 +
** [http://www.uniprot.org/uniprot/Q55786 Q55786]
 +
** [http://www.uniprot.org/uniprot/Q09582 Q09582]
 +
** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
 +
** [http://www.uniprot.org/uniprot/P13009 P13009]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=GTP:alpha-D-mannose-1-phosphate guanylyltransferase}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_14704}}
+
{{#set: ec number=EC-2.1.1.13}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_1602}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-3841|HOMOSER-METSYN-PWY|1CMET2-PWY|PWY-2201|HSERMETANA-PWY|ADENOSYLHOMOCYSCAT-PWY}}
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:07, 21 March 2018

Reaction HOMOCYSMETB12-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an N5-methyl-tetrahydrofolate[c] + 1 L-homocysteine[c] => 1 a tetrahydrofolate[c] + 1 L-methionine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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