Difference between revisions of "RXN0-1461"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-E-D GLYCOLYSIS-E-D] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxid...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-E-D GLYCOLYSIS-E-D] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** superpathway of glycolysis and Entner-Doudoroff
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** coproporphyrinogen-iii_oxidase
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** coproporphyrinogen_iii_oxidase_chloroplast
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** coproporphyrinogen_oxidase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[6PGLUCONOLACT-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[WATER]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
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** 5 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_10799]]
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** 1 oxygen[c] '''+''' 2 H+[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 H2O[c] '''+''' 1 protoporphyrinogen IX[c] '''+''' 2 CO2[c]
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*** [[Tiso_gene_20412]]
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*** [[Tiso_gene_5901]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_15950]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_8585]]
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* Gene: [[Tiso_gene_3671]]
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** 6 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_2247]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: EC-NUMBER
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-athaliana]]
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* [[ENTNER-DOUDOROFF-PWY]]
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** Source: [[orthology-synechocystis]]
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** 0 associated gene:
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** Source: [[orthology-esiliculosus]]
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* [[GLU6PDEHYDROG-RXN]]
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** Source: [[orthology-creinhardtii]]
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_13364]]
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*** [[Tiso_gene_16918]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_14877]]
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*** Assignment: EC-NUMBER
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** 4 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_13365]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_2246]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[GLYCOLYSIS]]
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*** Assignment: EC-NUMBER
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** 0 associated gene:
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** Source: [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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*** Assignment: EC-NUMBER
 +
== Pathways  ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=GLYCOLYSIS-E-D GLYCOLYSIS-E-D]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
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{{#set: taxonomic range=TAX-2759}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
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{{#set: common name=superpathway of glycolysis and Entner-Doudoroff}}
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* UNIPROT:
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/P36552 P36552]
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/O25376 O25376]
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** [http://www.uniprot.org/uniprot/P36553 P36553]
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** [http://www.uniprot.org/uniprot/P33771 P33771]
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** [http://www.uniprot.org/uniprot/P43899 P43899]
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** [http://www.uniprot.org/uniprot/O25824 O25824]
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** [http://www.uniprot.org/uniprot/P54304 P54304]
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** [http://www.uniprot.org/uniprot/P11353 P11353]
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** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
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** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
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** [http://www.uniprot.org/uniprot/P36551 P36551]
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** [http://www.uniprot.org/uniprot/P35055 P35055]
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** [http://www.uniprot.org/uniprot/P43898 P43898]
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** [http://www.uniprot.org/uniprot/P72848 P72848]
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** [http://www.uniprot.org/uniprot/P73245 P73245]
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** [http://www.uniprot.org/uniprot/P74132 P74132]
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** [http://www.uniprot.org/uniprot/Q51676 Q51676]
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** [http://www.uniprot.org/uniprot/Q42946 Q42946]
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** [http://www.uniprot.org/uniprot/Q42840 Q42840]
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** [http://www.uniprot.org/uniprot/Q39581 Q39581]
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** [http://www.uniprot.org/uniprot/P95651 P95651]
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** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=coproporphyrinogen-iii_oxidase}}
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{{#set: common name=coproporphyrinogen_iii_oxidase_chloroplast}}
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{{#set: common name=coproporphyrinogen_oxidase}}
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{{#set: ec number=EC-1.3.3.3}}
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{{#set: gene associated=Tiso_gene_3671|Tiso_gene_2247|Tiso_gene_13364|Tiso_gene_13365|Tiso_gene_2246}}
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{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:27, 21 March 2018

Reaction RXN0-1461

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • coproporphyrinogen-iii_oxidase
    • coproporphyrinogen_iii_oxidase_chloroplast
    • coproporphyrinogen_oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-1461&oldid=41765"