Difference between revisions of "RXN0-2161"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** structural_maintenan...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
+
 
* common name:
 
* common name:
−
** ascorbate glutathione cycle
+
** ORF
 +
** structural_maintenance_of_chromosomes_protein_6
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
−
** hydrogen peroxide detoxification
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''2''' reactions found over '''4''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-3521]]
+
** 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[AMP]][c]
−
** 3 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_5435]]
+
** 1 ATP[c] '''+''' 1 L-serine[c] '''+''' 1 a tRNAsec[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 AMP[c]
−
*** [[Tiso_gene_15962]]
+
 
−
*** [[Tiso_gene_16028]]
+
== Genes associated with this reaction  ==
−
** 1 reconstruction source(s) associated:
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[annotation-in-silico_annotation]]
+
* Gene: [[Tiso_gene_587]]
−
* [[RXN-3523]]
+
** Source: [[annotation-experimental_annotation]]
−
** 0 associated gene:
+
*** Assignment: EC-NUMBER
−
** 1 reconstruction source(s) associated:
+
** Source: [[orthology-esiliculosus]]
−
*** [[annotation-in-silico_annotation]]
+
* Gene: [[Tiso_gene_10015]]
−
== Reaction(s) not found ==
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=1.8.5.1-RXN 1.8.5.1-RXN]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3522 RXN-3522]
+
* Gene: [[Tiso_gene_1682]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1684]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* ARACYC:
+
* LIGAND-RXN:
−
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-2261 PWY-2261]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
−
{{#set: taxonomic range=TAX-33682}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: taxonomic range=TAX-33090}}
+
{{#set: common name=ORF}}
−
{{#set: taxonomic range=TAX-1117}}
+
{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
−
{{#set: common name=ascorbate glutathione cycle}}
+
{{#set: ec number=EC-6.1.1.11}}
−
{{#set: common name=hydrogen peroxide detoxification}}
+
{{#set: gene associated=Tiso_gene_587|Tiso_gene_10015|Tiso_gene_1682|Tiso_gene_1684}}
−
{{#set: reaction found=2}}
+
{{#set: in pathway=PWY0-901|PWY-6281}}
−
{{#set: total reaction=4}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: completion rate=50.0}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:42, 21 March 2018

Reaction RXN0-2161

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • structural_maintenance_of_chromosomes_protein_6
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-serine[c] + 1 a tRNAsec[c] => 1 diphosphate[c] + 1 an L-seryl-[tRNAsec][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-2161&oldid=43304"