Difference between revisions of "RXN0-2161"

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(Created page with "Category:Gene == Gene Tiso_gene_909 == * left end position: ** 11809 * transcription direction: ** POSITIVE * right end position: ** 13675 * centisome position: ** 42.6564...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** structural_maintenan...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_909 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
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* left end position:
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* direction:
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** 11809
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** ORF
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* right end position:
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** structural_maintenance_of_chromosomes_protein_6
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** 13675
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
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** 42.656406   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-12459]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[AMP]][c]
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***ec-number
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* With common name(s):
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== Pathways associated ==
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** 1 ATP[c] '''+''' 1 L-serine[c] '''+''' 1 a tRNAsec[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_587]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_10015]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_1682]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_1684]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=11809}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
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{{#set: right end position=13675}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=42.656406    }}
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{{#set: common name=ORF}}
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{{#set: reaction associated=RXN-12459}}
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{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
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{{#set: ec number=EC-6.1.1.11}}
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{{#set: gene associated=Tiso_gene_587|Tiso_gene_10015|Tiso_gene_1682|Tiso_gene_1684}}
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{{#set: in pathway=PWY0-901|PWY-6281}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:42, 21 March 2018

Reaction RXN0-2161

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • structural_maintenance_of_chromosomes_protein_6
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-serine[c] + 1 a tRNAsec[c] => 1 diphosphate[c] + 1 an L-seryl-[tRNAsec][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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