Difference between revisions of "RXN0-5184"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=O-SUCCHOMOSERLYASE-RXN O-SUCCHOMOSERLYASE-RXN] == * direction: ** REVERSIBLE * ec number: ** [http:...")
(Created page with "Category:Gene == Gene Tiso_gene_14220 == * right end position: ** 5704 * transcription direction: ** POSITIVE * left end position: ** 146 * centisome position: ** 2.530329...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=O-SUCCHOMOSERLYASE-RXN O-SUCCHOMOSERLYASE-RXN] ==
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== Gene Tiso_gene_14220 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 5704
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.5.1.48 EC-2.5.1.48]
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** POSITIVE
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* left end position:
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** 146
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* centisome position:
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** 2.5303292   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.4.1.213-RXN]]
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** 1 [[O-SUCCINYL-L-HOMOSERINE]][c] '''+''' 1 [[CYS]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[SUC]][c]
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** Source: [[orthology-synechocystis]]
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* With common name(s):
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* Reaction: [[RXN1G-1435]]
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** 1 O-succinyl-L-homoserine[c] '''+''' 1 L-cysteine[c] '''<=>''' 1 H+[c] '''+''' 1 L-cystathionine[c] '''+''' 1 succinate[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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== Genes associated with this reaction  ==
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* Reaction: [[RXN1G-1436]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_3732]]
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*** Assignment: automated-name-match
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** [[pantograph]]-[[athaliana]]
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* Reaction: [[RXN1G-1437]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: automated-name-match
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== Pathways  ==
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* Reaction: [[RXN1G-1438]]
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* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-I9 PWY-I9]
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** Source: [[annotation-in-silico_annotation]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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*** Assignment: automated-name-match
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* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
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* Reaction: [[RXN1G-1439]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: automated-name-match
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* Category: [[orthology]]
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* Reaction: [[TREHALOSE6PSYN-RXN]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[TREHALOSEPHOSPHA-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
 
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** Source: [[orthology-creinhardtii]]
 
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*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[UG6PGT]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[UG6PGTn]]
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[TREHALOSESYN-PWY]]
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* [[PWYG-321]]
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* [[PWY-881]]
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* [[TRESYN-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5704}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20397 20397]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=146}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03260 R03260]
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{{#set: centisome position=2.5303292    }}
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* UNIPROT:
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{{#set: reaction associated=2.4.1.213-RXN|RXN1G-1435|RXN1G-1436|RXN1G-1437|RXN1G-1438|RXN1G-1439|TREHALOSE6PSYN-RXN|TREHALOSEPHOSPHA-RXN|UG6PGT|UG6PGTn}}
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** [http://www.uniprot.org/uniprot/P0A4K2 P0A4K2]
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{{#set: pathway associated=TREHALOSESYN-PWY|PWYG-321|PWY-881|TRESYN-PWY}}
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** [http://www.uniprot.org/uniprot/Q9CEC6 Q9CEC6]
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** [http://www.uniprot.org/uniprot/P38675 P38675]
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** [http://www.uniprot.org/uniprot/P24601 P24601]
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** [http://www.uniprot.org/uniprot/P00935 P00935]
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** [http://www.uniprot.org/uniprot/O04981 O04981]
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** [http://www.uniprot.org/uniprot/O04982 O04982]
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** [http://www.uniprot.org/uniprot/O81334 O81334]
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** [http://www.uniprot.org/uniprot/Q79VD9 Q79VD9]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.5.1.48}}
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{{#set: gene associated=Tiso_gene_3732}}
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{{#set: in pathway=PWY-I9|HOMOSER-METSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 16:52, 21 March 2018

Gene Tiso_gene_14220

  • right end position:
    • 5704
  • transcription direction:
    • POSITIVE
  • left end position:
    • 146
  • centisome position:
    • 2.5303292
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-5184&oldid=37003"