Difference between revisions of "RXN0-884"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_7948 == * right end position: ** 8322 * transcription direction: ** POSITIVE * left end position: ** 7283 * centisome position: ** 68.23122...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-884 RXN0-884] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http://e...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-884 RXN0-884] == |
| − | * | + | * direction: |
| − | + | ** LEFT-TO-RIGHT | |
| − | + | * common name: | |
| − | ** | + | ** ORF |
| − | * | + | * ec number: |
| − | ** | + | ** [http://enzyme.expasy.org/EC/1.17.7.4 EC-1.17.7.4] |
| − | * | + | |
| − | ** | + | |
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * | + | * With identifiers: |
| + | ** 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''=>''' 1 [[CPD-4211]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c] | ||
| + | * With common name(s): | ||
| + | ** 2 H+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] '''=>''' 1 dimethylallyl diphosphate[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 H2O[c] | ||
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Tiso_gene_5609]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
| − | *** Assignment: | + | *** Assignment: EC-NUMBER |
** Source: [[annotation-experimental_annotation]] | ** Source: [[annotation-experimental_annotation]] | ||
| − | *** Assignment: | + | *** Assignment: EC-NUMBER |
| − | * | + | ** Source: [[orthology-esiliculosus]] |
| + | == Pathways == | ||
| + | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY] | ||
| + | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] | ||
| + | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
| − | *** | + | *** Tool: [[pathwaytools]] |
** Source: [[annotation-experimental_annotation]] | ** Source: [[annotation-experimental_annotation]] | ||
| − | *** | + | *** Tool: [[pathwaytools]] |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
== External links == | == External links == | ||
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R08210 R08210] |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07219 R07219] |
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: | + | {{#set: common name=ORF}} |
| − | {{#set: | + | {{#set: ec number=EC-1.17.7.4}} |
| + | {{#set: gene associated=Tiso_gene_5609}} | ||
| + | {{#set: in pathway=NONMEVIPP-PWY|PWY-7560}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 21:23, 21 March 2018
Contents
Reaction RXN0-884
- direction:
- LEFT-TO-RIGHT
- common name:
- ORF
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 2 PROTON[c] + 2 Reduced-ferredoxins[c] + 1 HYDROXY-METHYL-BUTENYL-DIP[c] => 1 CPD-4211[c] + 2 Oxidized-ferredoxins[c] + 1 WATER[c]
- With common name(s):
- 2 H+[c] + 2 a reduced ferredoxin [iron-sulfur] cluster[c] + 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] => 1 dimethylallyl diphosphate[c] + 2 an oxidized ferredoxin [iron-sulfur] cluster[c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_5609
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY-7560, methylerythritol phosphate pathway II: PWY-7560
- 9 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
