Difference between revisions of "RXN490-3641"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16137 RXN-16137] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] == * direction: ** LEFT-TO-RIGHT * common name: ** proline,2-oxoglutarate-...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16137 RXN-16137] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** thiolase
+
** proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
−
** acetyl-_c-acetyltransferase
+
−
** 3-ketoacyl-_thiolase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
* Synonym(s):
 
* Synonym(s):
 +
** prolyl hydroxylase
 +
** prolyl 4-hydroxylase
 +
** proline,2-oxoglutarate 4-dioxygenase
 +
** proline hydroxylase
 +
** protocollagen hydroxylase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-17388]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-17312]][c]
+
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[4-HYDROXY-L-PROLINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-oxo-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 docosahexaenoyl-CoA[c]
+
** 1 2-oxoglutarate[c] '''+''' 1 L-proline[c] '''+''' 1 oxygen[c] '''=>''' 1 CO2[c] '''+''' 1 succinate[c] '''+''' 1 trans-4-hydroxy-L-proline[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3855]]
+
* Gene: [[Tiso_gene_6296]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_16842]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_9636]]
−
* [[Tiso_gene_17451]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_3021]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_18689]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_15327]]
+
* Gene: [[Tiso_gene_15328]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_9035]]
−
* [[Tiso_gene_10116]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_13008]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_15594]]
−
* [[Tiso_gene_3856]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_9873]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18208]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9455]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16122]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2158]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17919]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17823]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18933]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9227]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18145]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_292]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2280]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1468]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18235]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19638]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9165]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17593]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8652]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
 
−
** '''14''' reactions found over '''14''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thiolase}}
+
{{#set: common name=proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)}}
−
{{#set: common name=acetyl-_c-acetyltransferase}}
+
{{#set: ec number=EC-1.14.11}}
−
{{#set: common name=3-ketoacyl-_thiolase}}
+
{{#set: common name=prolyl hydroxylase|prolyl 4-hydroxylase|proline,2-oxoglutarate 4-dioxygenase|proline hydroxylase|protocollagen hydroxylase}}
−
{{#set: ec number=EC-2.3.1.16}}
+
{{#set: gene associated=Tiso_gene_6296|Tiso_gene_16842|Tiso_gene_9636|Tiso_gene_3021|Tiso_gene_18689|Tiso_gene_15328|Tiso_gene_9035|Tiso_gene_13008|Tiso_gene_15594|Tiso_gene_9873|Tiso_gene_18208|Tiso_gene_9455|Tiso_gene_16122|Tiso_gene_2158|Tiso_gene_17919|Tiso_gene_17823|Tiso_gene_18933|Tiso_gene_9227|Tiso_gene_18145|Tiso_gene_292|Tiso_gene_2280|Tiso_gene_1468|Tiso_gene_18235|Tiso_gene_19638|Tiso_gene_9165|Tiso_gene_17593|Tiso_gene_8652}}
−
{{#set: gene associated=Tiso_gene_3855|Tiso_gene_17451|Tiso_gene_15327|Tiso_gene_10116|Tiso_gene_3856}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-7606}}
+
{{#set: reconstruction category=orthology|manual}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|manual-primary_network|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 21:08, 21 March 2018

Reaction RXN490-3641

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
  • ec number:
  • Synonym(s):
    • prolyl hydroxylase
    • prolyl 4-hydroxylase
    • proline,2-oxoglutarate 4-dioxygenase
    • proline hydroxylase
    • protocollagen hydroxylase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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