Difference between revisions of "RXN66-546"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxidas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-546 RXN66-546] == * direction: ** LEFT-TO-RIGHT * common name: ** pyrroline-5-carboxylate_red...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-546 RXN66-546] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** coproporphyrinogen-iii_oxidase
+
** pyrroline-5-carboxylate_reductase
 +
** ORF
 +
** ankyrin_repeat-containing_protein
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.98.3 EC-1.3.98.3]
+
** [http://enzyme.expasy.org/EC/1.5.1.2 EC-1.5.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
+
** 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PYRROLINE-HYDROXY-CARBOXYLATE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[4-HYDROXY-L-PROLINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 S-adenosyl-L-methionine[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 CO2[c] '''+''' 2 5'-deoxyadenosine[c] '''+''' 2 L-methionine[c] '''+''' 1 protoporphyrinogen IX[c]
+
** 1 NAD(P)H[c] '''+''' 1 (3R,5S)-1-pyrroline-3-hydroxy-5-carboxylate[c] '''+''' 2 H+[c] '''=>''' 1 NAD(P)+[c] '''+''' 1 trans-4-hydroxy-L-proline[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_5577]]
+
* Gene: [[Tiso_gene_20218]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_18066]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_8625]]
−
* Gene: [[Tiso_gene_13365]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-athaliana]]
+
** Source: [[annotation-experimental_annotation]]
−
** Source: [[orthology-synechocystis]]
+
*** Assignment: EC-NUMBER
−
** Source: [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_17059]]
−
* Gene: [[Tiso_gene_13364]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19254]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
** Source: [[orthology-athaliana]]
 
−
** Source: [[orthology-synechocystis]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_4004]]
 
−
** Source: [[orthology-esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15425 15425]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=coproporphyrinogen-iii_oxidase}}
+
{{#set: common name=pyrroline-5-carboxylate_reductase}}
−
{{#set: ec number=EC-1.3.98.3}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_5577|Tiso_gene_18066|Tiso_gene_13365|Tiso_gene_13364|Tiso_gene_4004}}
+
{{#set: common name=ankyrin_repeat-containing_protein}}
−
{{#set: in pathway=PWY-5531|HEMESYN2-PWY}}
+
{{#set: ec number=EC-1.5.1.2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: gene associated=Tiso_gene_20218|Tiso_gene_8625|Tiso_gene_17059|Tiso_gene_19254}}
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 21:25, 21 March 2018

Reaction RXN66-546

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pyrroline-5-carboxylate_reductase
    • ORF
    • ankyrin_repeat-containing_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN66-546&oldid=48635"