Difference between revisions of "S-ADENMETSYN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SELENOHOMOCYSTEINE SELENOHOMOCYSTEINE] == * smiles: ** C(C[Se])C([N+])C(=O)[O-] * inchi key: **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** S-adenosylmet...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SELENOHOMOCYSTEINE SELENOHOMOCYSTEINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] ==
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* smiles:
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* direction:
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** C(C[Se])C([N+])C(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=RCWCGLALNCIQNM-VKHMYHEASA-N
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* common name:
 
* common name:
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** seleno-L-homocysteine
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** S-adenosylmethionine synthase 1
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* molecular weight:
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* ec number:
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** 181.073   
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** [http://enzyme.expasy.org/EC/2.5.1.6 EC-2.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
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** 2-amino-4-selanyl-butanoate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-12729]]
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** 1 [[MET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PPI]][c]
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* [[RXN-15137]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 L-methionine[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 S-adenosyl-L-methionine[c] '''+''' 1 diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_13443]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SAM-PWY SAM-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE-DEG1-PWY METHIONINE-DEG1-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[ETHYL-PWY]], ethylene biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-PWY ETHYL-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5912 PWY-5912]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
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** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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* RHEA:
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** [http://www.genome.jp/dbget-bin/www_bget?C05698 C05698]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21080 21080]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=84850 84850]
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** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
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* METABOLIGHTS : MTBLC9096
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* UNIPROT:
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P19358 P19358]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90659042 90659042]
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** [http://www.uniprot.org/uniprot/P18298 P18298]
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* HMDB : HMDB04119
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** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
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{{#set: smiles=C(C[Se])C([N+])C(=O)[O-]}}
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** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
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{{#set: inchi key=InChIKey=RCWCGLALNCIQNM-VKHMYHEASA-N}}
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** [http://www.uniprot.org/uniprot/P54419 P54419]
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{{#set: common name=seleno-L-homocysteine}}
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** [http://www.uniprot.org/uniprot/P56460 P56460]
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{{#set: molecular weight=181.073    }}
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** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
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{{#set: common name=2-amino-4-selanyl-butanoate}}
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** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
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{{#set: produced by=RXN-12729|RXN-15137}}
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** [http://www.uniprot.org/uniprot/O50163 O50163]
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** [http://www.uniprot.org/uniprot/P43762 P43762]
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** [http://www.uniprot.org/uniprot/P23686 P23686]
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** [http://www.uniprot.org/uniprot/P17562 P17562]
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** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
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** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
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** [http://www.uniprot.org/uniprot/Q90862 Q90862]
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** [http://www.uniprot.org/uniprot/P13444 P13444]
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** [http://www.uniprot.org/uniprot/P31153 P31153]
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** [http://www.uniprot.org/uniprot/Q00266 Q00266]
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** [http://www.uniprot.org/uniprot/P43281 P43281]
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** [http://www.uniprot.org/uniprot/P40320 P40320]
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** [http://www.uniprot.org/uniprot/P43280 P43280]
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** [http://www.uniprot.org/uniprot/P43282 P43282]
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** [http://www.uniprot.org/uniprot/P48498 P48498]
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** [http://www.uniprot.org/uniprot/P10659 P10659]
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** [http://www.uniprot.org/uniprot/Q39465 Q39465]
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** [http://www.uniprot.org/uniprot/P48466 P48466]
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** [http://www.uniprot.org/uniprot/P49612 P49612]
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** [http://www.uniprot.org/uniprot/P49613 P49613]
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** [http://www.uniprot.org/uniprot/P78003 P78003]
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** [http://www.uniprot.org/uniprot/Q49070 Q49070]
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** [http://www.uniprot.org/uniprot/P0A817 P0A817]
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** [http://www.uniprot.org/uniprot/P50299 P50299]
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** [http://www.uniprot.org/uniprot/O22350 O22350]
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** [http://www.uniprot.org/uniprot/P24260 P24260]
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** [http://www.uniprot.org/uniprot/O60198 O60198]
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** [http://www.uniprot.org/uniprot/Q12642 Q12642]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=S-adenosylmethionine synthase 1}}
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{{#set: ec number=EC-2.5.1.6}}
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{{#set: gene associated=Tiso_gene_13443}}
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{{#set: in pathway=SAM-PWY|METHIONINE-DEG1-PWY|ETHYL-PWY|PWY-5912|PWY-5041}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:51, 21 March 2018

Reaction S-ADENMETSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • S-adenosylmethionine synthase 1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-methionine[c] + 1 ATP[c] + 1 H2O[c] => 1 phosphate[c] + 1 S-adenosyl-L-methionine[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SAM-PWY, S-adenosyl-L-methionine biosynthesis: SAM-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • METHIONINE-DEG1-PWY, L-methionine degradation I (to L-homocysteine): METHIONINE-DEG1-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • ETHYL-PWY, ethylene biosynthesis I (plants): ETHYL-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5912, 2'-deoxymugineic acid phytosiderophore biosynthesis: PWY-5912
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5041, S-adenosyl-L-methionine cycle II: PWY-5041
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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