Difference between revisions of "SAMDECARB-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_15890 == * right end position: ** 380 * transcription direction: ** POSITIVE * left end position: ** 119 * centisome position: ** 2.517453...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** s-adenosylmethionin...")
 
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_15890 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] ==
−
* right end position:
+
* direction:
−
** 380
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** s-adenosylmethionine_decarboxylase_proenzyme
−
* left end position:
+
* ec number:
−
** 119
+
** [http://enzyme.expasy.org/EC/4.1.1.50 EC-4.1.1.50]
−
* centisome position:
+
−
** 2.517453   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* Reaction: [[RXN0-1281]]
+
* With identifiers:
 +
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 +
* With common name(s):
 +
** 1 S-adenosyl-L-methionine[c] '''+''' 1 H+[c] '''=>''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 CO2[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_4269]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11030]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6834]], spermidine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: automated-name-match
+
*** Tool: [[pathwaytools]]
−
== Pathways associated ==
+
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=380}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15981 15981]
−
{{#set: left end position=119}}
+
* LIGAND-RXN:
−
{{#set: centisome position=2.517453    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
−
{{#set: reaction associated=RXN0-1281}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P82184 P82184]
 +
** [http://www.uniprot.org/uniprot/P21182 P21182]
 +
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
 +
** [http://www.uniprot.org/uniprot/P17707 P17707]
 +
** [http://www.uniprot.org/uniprot/P28918 P28918]
 +
** [http://www.uniprot.org/uniprot/P17708 P17708]
 +
** [http://www.uniprot.org/uniprot/P50243 P50243]
 +
** [http://www.uniprot.org/uniprot/P46255 P46255]
 +
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
 +
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
 +
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
 +
** [http://www.uniprot.org/uniprot/P79888 P79888]
 +
** [http://www.uniprot.org/uniprot/O04009 O04009]
 +
** [http://www.uniprot.org/uniprot/O24575 O24575]
 +
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
 +
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
 +
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
 +
** [http://www.uniprot.org/uniprot/O49972 O49972]
 +
** [http://www.uniprot.org/uniprot/O65354 O65354]
 +
** [http://www.uniprot.org/uniprot/O02655 O02655]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=s-adenosylmethionine_decarboxylase_proenzyme}}
 +
{{#set: ec number=EC-4.1.1.50}}
 +
{{#set: gene associated=Tiso_gene_4269|Tiso_gene_11030}}
 +
{{#set: in pathway=ARGSPECAT-PWY|BSUBPOLYAMSYN-PWY|PWY-6834}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:25, 21 March 2018

Reaction SAMDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • s-adenosylmethionine_decarboxylase_proenzyme
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SAMDECARB-RXN&oldid=48605"