Difference between revisions of "SERINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-OXOBUTANOATE 2-OXOBUTANOATE] == * smiles: ** CCC(=O)C(=O)[O-] * common name: ** 2-oxobutanoat...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-OXOBUTANOATE 2-OXOBUTANOATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** CCC(=O)C(=O)[O-]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** 2-oxobutanoate
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** ORF
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* inchi key:
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** structural_maintenance_of_chromosomes_protein_6
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** InChIKey=TYEYBOSBBBHJIV-UHFFFAOYSA-M
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
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** 101.082   
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* Synonym(s):
 
* Synonym(s):
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** 2-oxobutyrate
 
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** 2-ketobutyrate
 
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** 2-oxobutyric acid
 
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** α-oxobutyric acid
 
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** α-ketobutyrate
 
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** α-ketobutyric acid
 
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** 2-oxo-butyrate
 
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** 2-keto-butyrate
 
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** 2-ketobutyric acid
 
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** a-ketobutyric acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[ACETOOHBUTSYN-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ATP]][c] '''+''' 1 [[SER-tRNAs]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* [[HOMOSERDEAM-RXN]]
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* With common name(s):
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* [[RXN-7745]]
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** 1 ATP[c] '''+''' 1 a tRNAser[c] '''+''' 1 L-serine[c] '''=>''' 1 an L-seryl-[tRNAser][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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* [[RXN-15130]]
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* [[METBALT-RXN]]
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== Genes associated with this reaction  ==
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* [[4.1.99.4-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-15123]]
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* Gene: [[Tiso_gene_1682]]
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* [[THREDEHYD-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) of unknown directionality ==
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10015]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_587]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_1684]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 600-18-0
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* RHEA:
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* BIGG : 2obut
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12292 12292]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=3593277 3593277]
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** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
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* HMDB : HMDB00005
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
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** [http://www.genome.jp/dbget-bin/www_bget?C00109 C00109]
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** [http://www.uniprot.org/uniprot/O51244 O51244]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/O66647 O66647]
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** [http://www.chemspider.com/Chemical-Structure.2829426.html 2829426]
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** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q58477 Q58477]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16763 16763]
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** [http://www.uniprot.org/uniprot/O27194 O27194]
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* METABOLIGHTS : MTBLC16763
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** [http://www.uniprot.org/uniprot/O84734 O84734]
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{{#set: smiles=CCC(=O)C(=O)[O-]}}
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** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
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{{#set: common name=2-oxobutanoate}}
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** [http://www.uniprot.org/uniprot/P47251 P47251]
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{{#set: inchi key=InChIKey=TYEYBOSBBBHJIV-UHFFFAOYSA-M}}
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** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
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{{#set: molecular weight=101.082    }}
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** [http://www.uniprot.org/uniprot/O83653 O83653]
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{{#set: common name=2-oxobutyrate|2-ketobutyrate|2-oxobutyric acid|α-oxobutyric acid|α-ketobutyrate|α-ketobutyric acid|2-oxo-butyrate|2-keto-butyrate|2-ketobutyric acid|a-ketobutyric acid}}
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** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
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{{#set: consumed by=ACETOOHBUTSYN-RXN}}
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** [http://www.uniprot.org/uniprot/P49591 P49591]
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{{#set: produced by=HOMOSERDEAM-RXN|RXN-7745|RXN-15130|METBALT-RXN|4.1.99.4-RXN|RXN-15123|THREDEHYD-RXN}}
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** [http://www.uniprot.org/uniprot/P56458 P56458]
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** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
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** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
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** [http://www.uniprot.org/uniprot/P43833 P43833]
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** [http://www.uniprot.org/uniprot/P26636 P26636]
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** [http://www.uniprot.org/uniprot/P39919 P39919]
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** [http://www.uniprot.org/uniprot/P37464 P37464]
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** [http://www.uniprot.org/uniprot/Q39230 Q39230]
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** [http://www.uniprot.org/uniprot/P75107 P75107]
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** [http://www.uniprot.org/uniprot/P73201 P73201]
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** [http://www.uniprot.org/uniprot/O82108 O82108]
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** [http://www.uniprot.org/uniprot/O82110 O82110]
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** [http://www.uniprot.org/uniprot/O81983 O81983]
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** [http://www.uniprot.org/uniprot/O45887 O45887]
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** [http://www.uniprot.org/uniprot/O14018 O14018]
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** [http://www.uniprot.org/uniprot/P54221 P54221]
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** [http://www.uniprot.org/uniprot/P07284 P07284]
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** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
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{{#set: ec number=EC-6.1.1.11}}
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{{#set: gene associated=Tiso_gene_1682|Tiso_gene_10015|Tiso_gene_587|Tiso_gene_1684}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:12, 21 March 2018

Reaction SERINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • structural_maintenance_of_chromosomes_protein_6
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a tRNAser[c] + 1 L-serine[c] => 1 an L-seryl-[tRNAser][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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