Difference between revisions of "SHIKIMATE-5-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15512 RXN-15512] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_mutase ** bis...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15512 RXN-15512] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphoglycerate_mutase
+
** pentafunctional_protein
−
** bisphosphoglycerate-dependent_phosphoglycerate_mutase
+
* ec number:
−
** ORF
+
** [http://enzyme.expasy.org/EC/1.1.1.25 EC-1.1.1.25]
−
** plastid_phosphoglycerate_mutase_protein
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Protein-pi-phospho-L-histidines]][c] '''+''' 1 [[CPD-16758]][c] '''<=>''' 1 [[Protein-Histidines]][c] '''+''' 1 [[23-DIPHOSPHOGLYCERATE]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a [protein]-N&pi;-phospho-L-histidine[c] '''+''' 1 2/3-phospho-D-glycerate[c] '''<=>''' 1 a [protein]-L-histidine[c] '''+''' 1 2,3-diphospho-D-glycerate[c]
+
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3-dehydroshikimate[c] '''=>''' 1 NADP+[c] '''+''' 1 shikimate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16271]]
+
* Gene: [[Tiso_gene_5752]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_14664]]
+
* Gene: [[Tiso_gene_5753]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_2841]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14530]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9923]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9922]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7201]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2365]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=phosphoglycerate_mutase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737]
−
{{#set: common name=bisphosphoglycerate-dependent_phosphoglycerate_mutase}}
+
* LIGAND-RXN:
−
{{#set: common name=ORF}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
−
{{#set: common name=plastid_phosphoglycerate_mutase_protein}}
+
* UNIPROT:
−
{{#set: gene associated=Tiso_gene_16271|Tiso_gene_14664|Tiso_gene_2841|Tiso_gene_14530|Tiso_gene_9923|Tiso_gene_9922|Tiso_gene_7201|Tiso_gene_2365}}
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
{{#set: in pathway=}}
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
 +
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
 +
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
 +
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
 +
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
 +
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
 +
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
 +
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
 +
** [http://www.uniprot.org/uniprot/P15770 P15770]
 +
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 +
** [http://www.uniprot.org/uniprot/O65917 O65917]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=pentafunctional_protein}}
 +
{{#set: ec number=EC-1.1.1.25}}
 +
{{#set: gene associated=Tiso_gene_5752|Tiso_gene_5753}}
 +
{{#set: in pathway=PWY-6163}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:26, 21 March 2018

Reaction SHIKIMATE-5-DEHYDROGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pentafunctional_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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