Semantic search

	Common name	Reaction found	Completion rate
CYSTSYN-PWY	L-cysteine biosynthesis I	2	100.0
DAPLYSINESYN-PWY	L-lysine biosynthesis I L-lysine and L-diaminopimelate biosynthesis	6	67.0
DARABCAT-PWY	D-arabinose degradation II D-arabinose catabolism	1	50.0
DARABCATK12-PWY	D-arabinose degradation I D-arabinose catabolism	1	25.0
DARABITOLUTIL-PWY	D-arabitol degradation D-arabitol utilization	1	50.0
DETOX1-PWY	Superoxide radicals degradation Removal of superoxide radicals	2	100.0
DETOX1-PWY-1	Reactive oxygen species degradation Removal of superoxide radicals	5	83.0
DHGLUCONATE-PYR-CAT-PWY	Glucose degradation (oxidative) 2-dehydro-D-gluconate pyruvate catabolism 2-dehydro-D-gluconate pyruvate degradation 2-dehydro-D-gluconate degradation	1	20.0
DISSULFRED-PWY	Sulfate reduction IV (dissimilatory, to hydrogen sufide)) Sulfate respiration	1	25.0
DTDPRHAMSYN-PWY	DTDP-L-rhamnose biosynthesis I	3	75.0
ENTBACSYN-PWY	Enterobactin biosynthesis	3	30.0
ENTNER-DOUDOROFF-PWY	Entner-Doudoroff pathway I ED pathway	1	50.0
ETHYL-PWY	Ethylene biosynthesis I (plants) Ethene biosynthesis from methionine	2	67.0
ETOH-ACETYLCOA-ANA-PWY	Ethanol degradation I Acetyl-CoA biosynthesis (from alcohol)	2	100.0
FAO-PWY	Fatty acid β-oxidation I	5	71.0
FASYN-ELONG-PWY	Fatty acid elongation -- saturated	5	100.0
FASYN-INITIAL-PWY	Superpathway of fatty acid biosynthesis initiation (E. coli)	5	63.0
FERMENTATION-PWY	Mixed acid fermentation Fermentation	9	56.0
GALACTARDEG-PWY	D-galactarate degradation I D-galactarate catabolism	1	25.0
GALACTUROCAT-PWY	D-galacturonate degradation I D-galacturonate catabolism D-galacturonate degradation	2	40.0
GALDEG-PWY	D-galactose degradation II De Ley-Doudoroff pathway	1	50.0
GDPRHAMSYN-PWY	GDP-D-rhamnose biosynthesis GDP-α-D-rhamnose biosynthesis	1	50.0
GLNSYN-PWY	L-glutamine biosynthesis I	1	100.0
GLUCARDEG-PWY	D-glucarate degradation I D-glucarate catabolism	1	25.0
GLUCONEO-PWY	Gluconeogenesis I	13	100.0
GLUCOSE1PMETAB-PWY	Glucose and glucose-1-phosphate degradation	3	60.0
GLUDEG-I-PWY	GABA shunt	4	67.0
GLUDEG-II-PWY	L-glutamate degradation VII (to butanoate) L-glutamate fermentation Mesaconate pathway L-glutamate degradation VII (to butyrate)	2	33.0
GLUGLNSYN-PWY	L-glutamate biosynthesis IV L-glutamate biosynthesis from L-glutamine	1	100.0
GLUT-REDOX-PWY	Glutathione-glutaredoxin redox reactions	2	100.0
GLUTAMATE-DEG1-PWY	L-glutamate degradation I GDH shunt	1	100.0
GLUTAMINDEG-PWY	L-glutamine degradation I	1	100.0
GLUTAMINEFUM-PWY	L-glutamine degradation II	1	100.0
GLUTATHIONESYN-PWY	Glutathione biosynthesis	2	100.0
GLUTDEG-PWY	L-glutamate degradation II L-aspartate degradation	1	50.0
GLUTORN-PWY	L-ornithine biosynthesis I	5	100.0
GLUTSYN-PWY	L-glutamate biosynthesis I	1	100.0
GLUTSYNIII-PWY	L-glutamate biosynthesis III	1	100.0
GLYCEROLMETAB-PWY	Glycerol degradation V	1	50.0
GLYCINE-SYN2-PWY	Glycine biosynthesis II	2	67.0
GLYCLEAV-PWY	Glycine cleavage Glycine cleavage system Glycine decarboxylase complex Gcv system Glycine cleavage complex	3	100.0
GLYCOCAT-PWY	Glycogen degradation I Glycogen catabolism I	6	75.0
GLYCOGENSYNTH-PWY	Glycogen biosynthesis I (from ADP-D-Glucose)	1	25.0
GLYCOLATEMET-PWY	Glycolate and glyoxylate degradation I Glycolate utilization I Glycolate degradation I	1	25.0
GLYCOLYSIS	Glycolysis I (from glucose 6-phosphate) Embden-Meyerhof pathway Embden-Meyerhof-Parnas pathway EMP pathway Glycolysis (plastidic)	12	100.0
GLYCOLYSIS-E-D	Superpathway of glycolysis and Entner-Doudoroff	4	67.0
GLYCOLYSIS-TCA-GLYOX-BYPASS	Superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	3	60.0
GLYOXDEG-PWY	Glycolate and glyoxylate degradation II Glyoxylate degradation	1	50.0
GLYOXYLATE-BYPASS	Glyoxylate cycle Glyoxylate bypass Glyoxylate shunt	6	100.0
GLYSYN-ALA-PWY	Glycine biosynthesis III	1	100.0
GLYSYN-PWY	Glycine biosynthesis I	1	100.0
GLYSYN-THR-PWY	Glycine biosynthesis IV	1	100.0
HEME-BIOSYNTHESIS-II	Heme biosynthesis I (aerobic)	4	100.0
HEMESYN2-PWY	Heme biosynthesis II (anaerobic)	3	75.0
HISTSYN-PWY	L-histidine biosynthesis	10	100.0
HOMOCYSDEGR-PWY	L-cysteine biosynthesis III (from L-homocysteine) L-homocysteine degradation	4	100.0
HOMOSER-METSYN-PWY	L-methionine biosynthesis I L-methionine biosynthesis from L-homoserine L-methionine biosynthesis by transsulfuration	4	80.0
HOMOSER-THRESYN-PWY	L-threonine biosynthesis	2	100.0
HOMOSERSYN-PWY	L-homoserine biosynthesis	3	100.0
HSERMETANA-PWY	L-methionine biosynthesis III L-methionine biosynthesis by sulfhydrylation	3	75.0
HYDROXYPRODEG-PWY	Trans-4-hydroxy-L-proline degradation I 4-hydroxyproline degradation	1	20.0
ILEUDEG-PWY	L-isoleucine degradation I	4	67.0
ILEUSYN-PWY	L-isoleucine biosynthesis I (from threonine)	7	100.0
KDO-LIPASYN-PWY	(Kdo)2-lipid A biosynthesis I	1	50.0
KDO-NAGLIPASYN-PWY	Superpathway of (Kdo)2-lipid A biosynthesis	4	40.0
KDOSYN-PWY	Kdo transfer to lipid IVA I	2	100.0
KETOGLUCONMET-PWY	Ketogluconate metabolism	1	14.0
LACTOSEUTIL-PWY	Lactose degradation II Lactose degradation 2	1	33.0
LARABITOLUTIL-PWY	Xylitol degradation L-arabitol and xylitol utilization L-arabitol and xylitol degradation	1	50.0
LCYSDEG-PWY	L-cysteine degradation II L-cysteine catabolism L-cysteine degradation	3	100.0
LEU-DEG2-PWY	L-leucine degradation I	6	100.0
LEUSYN-PWY	L-leucine biosynthesis	6	100.0
LIPAS-PWY	Triacylglycerol degradation Triacylglyceride degradation Triacylglycerol hydrolysis Lipolysis	4	100.0
LIPASYN-PWY	Phospholipases Phospholipase pathway	2	40.0
LYSINE-AMINOAD-PWY	L-lysine biosynthesis IV	3	33.0
LYSINE-DEG1-PWY	L-lysine degradation XI (mammalian)	5	100.0
MALATE-ASPARTATE-SHUTTLE-PWY	L-aspartate degradation II Malate/L-aspartate shuttle pathway	2	100.0
MANNIDEG-PWY	Mannitol degradation I	1	100.0
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS	Protein N-glycosylation (eukaryotic, high mannose) Mannosyl-chito-dolichol biosynthesis Eukaryotic N-linked glycosylation Dolichyl-diphosphooligosaccharide biosynthesis and attachment	19	100.0
METHIONINE-DEG1-PWY	L-methionine degradation I (to L-homocysteine)	3	100.0
METHYLGALLATE-DEGRADATION-PWY	Methylgallate degradation	1	17.0
MGLDLCTANA-PWY	Methylglyoxal degradation VI	1	25.0
NAD-BIOSYNTHESIS-II	NAD salvage pathway III Nicotinamide adenine dinucleotide salvage	2	40.0
NAD-BIOSYNTHESIS-III	NAD biosynthesis III Nicotinamide adenine dinucleotide biosynthesis	1	50.0
NADPHOS-DEPHOS-PWY	NAD phosphorylation and dephosphorylation	2	67.0
NADPHOS-DEPHOS-PWY-1	NAD phosphorylation and transhydrogenation	1	50.0
NAGLIPASYN-PWY	Lipid IVA biosynthesis Lipid-A-precursor biosynthesis	5	83.0
NONMEVIPP-PWY	Methylerythritol phosphate pathway I Nonmevalonate isopentenyl diphosphate biosynthesis Methylerythritol phosphate degradation MEP degradation Deoxyxylulose phosphate pathway DOXP pathway Rohmer pathway Isopentenyl diphosphate biosynthesis -- mevalonate-independent Nonmevalonate isoprenoid pathway MEP pathway	9	100.0
NONOXIPENT-PWY	Pentose phosphate pathway (non-oxidative branch)	5	100.0
NPGLUCAT-PWY	Entner-Doudoroff pathway II (non-phosphorylative) Non-phosphorylated glucose catabolism Glucose degradation Non-phosphorylated glucose degradation	4	44.0
OANTIGEN-PWY	O-antigen building blocks biosynthesis (E. coli)	3	60.0
ORN-AMINOPENTANOATE-CAT-PWY	L-ornithine degradation I (L-proline biosynthesis)	1	100.0
ORNDEG-PWY	Superpathway of ornithine degradation	2	40.0
OXIDATIVEPENT-PWY	Pentose phosphate pathway (oxidative branch) I	3	100.0
P101-PWY	Ectoine biosynthesis	2	40.0
P105-PWY	TCA cycle IV (2-oxoglutarate decarboxylase) Citric acid cycle Tricarboxylic acid cycle Szent-Gyorgyi-Krebs cycle Krebs cycle	9	82.0
P108-PWY	Pyruvate fermentation to propanoate I Succinate-propionate fermentation pathway Pyruvate fermentation to propionate I Succinate-propanoate fermentation pathway	3	43.0
P122-PWY	Heterolactic fermentation Lactate heterofermentation Glucose fermentation to lactate Phosphoketolase pathway	14	78.0
P124-PWY	Bifidobacterium shunt Bifidum fermentation Bifidum pathway Fructose-6-phosphate pathway Bifidum shunt Glucose fermentation to lactate (Bifidobacteria)	11	73.0
P161-PWY	Acetylene degradation Acetylene fermentation	2	40.0

Semantic search

Navigation menu

Personal tools

Namespaces

Variants

Views

More

Search

Navigation

Metabolic network components

Reconstruction categories

Reconstruction tools

Reconstruction sources

Tools