Difference between revisions of "THREDEHYD-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_6187 == * right end position: ** 3613 * transcription direction: ** NEGATIVE * left end position: ** 846 * centisome position: ** 6.792453...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** threonine_mitochond...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_6187 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] ==
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* right end position:
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* direction:
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** 3613
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** threonine_mitochondrial
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* left end position:
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** ORF
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** 846
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** serine_racemase
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* centisome position:
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* ec number:
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** 6.792453   
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** [http://enzyme.expasy.org/EC/4.3.1.19 EC-4.3.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[3.2.1.21-RXN]]
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* With identifiers:
 +
** 1 [[THR]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[2-OXOBUTANOATE]][c]
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* With common name(s):
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** 1 L-threonine[c] '''=>''' 1 ammonium[c] '''+''' 1 2-oxobutanoate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_12535]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
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* Reaction: [[RXN-10769]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_17207]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: ec-number
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*** Assignment: EC-NUMBER
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* Reaction: [[RXN-10773]]
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* Gene: [[Tiso_gene_8525]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN-13602]]
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* [[PWY66-428]], L-threonine degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-428 PWY66-428]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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** Source: [[annotation-experimental_annotation]]
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* Category: [[orthology]]
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*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
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* Reaction: [[RXN-13603]]
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*** Tool: [[pantograph]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** Assignment: ec-number
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*** Tool: [[pantograph]]
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-synechocystis]]
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*** Assignment: ec-number
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-14179]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** Assignment: ec-number
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* Category: [[manual]]
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** Source: [[annotation-experimental_annotation]]
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** Source: [[manual-primary_network]]
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*** Assignment: ec-number
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* Category: [[annotation]]
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* Reaction: [[RXN-5341]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: ec-number
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−
* Reaction: [[RXN-8036]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: ec-number
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−
* Reaction: [[RXN-9674]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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−
* [[PWY-3121]]
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−
* [[PWY-6002]]
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−
* [[PWY-6788]]
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−
* [[PWY-5176]]
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−
* [[PWY-7092]]
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−
* [[PWY-7091]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=3613}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22108 22108]
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{{#set: left end position=846}}
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* LIGAND-RXN:
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{{#set: centisome position=6.792453    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00996 R00996]
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{{#set: reaction associated=3.2.1.21-RXN|RXN-10769|RXN-10773|RXN-13602|RXN-13603|RXN-14179|RXN-5341|RXN-8036|RXN-9674}}
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* UNIPROT:
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{{#set: pathway associated=PWY-3121|PWY-6002|PWY-6788|PWY-5176|PWY-7092|PWY-7091}}
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** [http://www.uniprot.org/uniprot/P25306 P25306]
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** [http://www.uniprot.org/uniprot/Q04513 Q04513]
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** [http://www.uniprot.org/uniprot/P37946 P37946]
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** [http://www.uniprot.org/uniprot/Q9JZW1 Q9JZW1]
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** [http://www.uniprot.org/uniprot/Q02145 Q02145]
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** [http://www.uniprot.org/uniprot/P66897 P66897]
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** [http://www.uniprot.org/uniprot/Q9WYJ1 Q9WYJ1]
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** [http://www.uniprot.org/uniprot/Q9PP95 Q9PP95]
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** [http://www.uniprot.org/uniprot/P25379 P25379]
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** [http://www.uniprot.org/uniprot/P00927 P00927]
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** [http://www.uniprot.org/uniprot/P20506 P20506]
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** [http://www.uniprot.org/uniprot/P0AGF6 P0AGF6]
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** [http://www.uniprot.org/uniprot/P04968 P04968]
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** [http://www.uniprot.org/uniprot/P20132 P20132]
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** [http://www.uniprot.org/uniprot/P09367 P09367]
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** [http://www.uniprot.org/uniprot/Q9RWU8 Q9RWU8]
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** [http://www.uniprot.org/uniprot/Q9JUX5 Q9JUX5]
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** [http://www.uniprot.org/uniprot/Q9ZD93 Q9ZD93]
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** [http://www.uniprot.org/uniprot/P31212 P31212]
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** [http://www.uniprot.org/uniprot/P36007 P36007]
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** [http://www.uniprot.org/uniprot/P73375 P73375]
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** [http://www.uniprot.org/uniprot/Q9T0D1 Q9T0D1]
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** [http://www.uniprot.org/uniprot/Q39469 Q39469]
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** [http://www.uniprot.org/uniprot/Q93968 Q93968]
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** [http://www.uniprot.org/uniprot/Q9XAA4 Q9XAA4]
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** [http://www.uniprot.org/uniprot/O94634 O94634]
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** [http://www.uniprot.org/uniprot/O59791 O59791]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=threonine_mitochondrial}}
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{{#set: common name=ORF}}
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{{#set: common name=serine_racemase}}
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{{#set: ec number=EC-4.3.1.19}}
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{{#set: gene associated=Tiso_gene_12535|Tiso_gene_17207|Tiso_gene_8525}}
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{{#set: in pathway=PWY66-428}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:13, 21 March 2018

Reaction THREDEHYD-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • threonine_mitochondrial
    • ORF
    • serine_racemase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-threonine[c] => 1 ammonium[c] + 1 2-oxobutanoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-428, L-threonine degradation V: PWY66-428
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=THREDEHYD-RXN&oldid=40245"