Difference between revisions of "THRESYN-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_6065 == * left end position: ** 5830 * transcription direction: ** POSITIVE * right end position: ** 8254 * centisome position: ** 46.24048...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** PSase ** geranylgerany...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_6065 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
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* left end position:
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* direction:
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** 5830
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** LEFT-TO-RIGHT
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* transcription direction:
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** POSITIVE
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* right end position:
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** 8254
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* centisome position:
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** 46.240482   
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* Synonym(s):
 
* Synonym(s):
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** PSase
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** geranylgeranyl-diphosphate geranylgeranyltransferase
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ASPARAGINE--TRNA-LIGASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-464]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 2 geranylgeranyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 prephytoene diphosphate[c]
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***ec-number
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== Pathways associated ==
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== Genes associated with this reaction  ==
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* [[TRNA-CHARGING-PWY]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_15914]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=5830}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22296 22296]
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{{#set: right end position=8254}}
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* LIGAND-RXN:
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{{#set: centisome position=46.240482    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
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{{#set: reaction associated=ASPARAGINE--TRNA-LIGASE-RXN}}
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* UNIPROT:
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/P53609 P53609]
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** [http://www.uniprot.org/uniprot/P37295 P37295]
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** [http://www.uniprot.org/uniprot/P22872 P22872]
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** [http://www.uniprot.org/uniprot/P53610 P53610]
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** [http://www.uniprot.org/uniprot/P53612 P53612]
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** [http://www.uniprot.org/uniprot/P17056 P17056]
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** [http://www.uniprot.org/uniprot/P49293 P49293]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: gene associated=Tiso_gene_15914}}
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{{#set: in pathway=PWY-6287|PWY-6475}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Revision as of 19:37, 18 March 2018

Reaction 2.5.1.32-RXN

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • PSase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 geranylgeranyl diphosphate[c] => 1 diphosphate[c] + 1 prephytoene diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 5 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=THRESYN-RXN&oldid=25740"