Difference between revisions of "TRANSALDOL-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN] == * direction: ** REVERSI...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** transaldolase...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* common name:
 +
** ORF
 +
** transaldolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.28 EC-1.2.1.28]
+
** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[BENZALDEHYDE]][c] '''<=>''' 1 [[BENZOATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[GAP]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 benzaldehyde[c] '''<=>''' 1 benzoate[c] '''+''' 2 H+[c] '''+''' 1 NADH[c]
+
** 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_17601]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1831]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6763]], salicortin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6763 PWY-6763]
+
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
−
** '''1''' reactions found over '''11''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-1501]], mandelate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1501 PWY-1501]
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-6766]], salicin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6766 PWY-6766]
+
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''11''' reactions found over '''15''' reactions in the full pathway
−
* [[TOLUENE-DEG-CATECHOL-PWY]], toluene degradation to benzoate: [http://metacyc.org/META/NEW-IMAGE?object=TOLUENE-DEG-CATECHOL-PWY TOLUENE-DEG-CATECHOL-PWY]
+
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6446]], benzoate biosynthesis III (CoA-dependent, non-&beta;-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6446 PWY-6446]
+
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6444]], benzoate biosynthesis II (CoA-independent, non-&beta;-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6444 PWY-6444]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01419 R01419]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P43503 P43503]
+
** [http://www.uniprot.org/uniprot/P17441 P17441]
 +
** [http://www.uniprot.org/uniprot/P17440 P17440]
 +
** [http://www.uniprot.org/uniprot/P37837 P37837]
 +
** [http://www.uniprot.org/uniprot/P45055 P45055]
 +
** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
 +
** [http://www.uniprot.org/uniprot/P0A867 P0A867]
 +
** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
 +
** [http://www.uniprot.org/uniprot/Q58370 Q58370]
 +
** [http://www.uniprot.org/uniprot/P34214 P34214]
 +
** [http://www.uniprot.org/uniprot/P0A870 P0A870]
 +
** [http://www.uniprot.org/uniprot/P15019 P15019]
 +
** [http://www.uniprot.org/uniprot/P53228 P53228]
 +
** [http://www.uniprot.org/uniprot/P51778 P51778]
 +
** [http://www.uniprot.org/uniprot/P72797 P72797]
 +
** [http://www.uniprot.org/uniprot/O04894 O04894]
 +
** [http://www.uniprot.org/uniprot/P78865 P78865]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: ec number=EC-1.2.1.28}}
+
{{#set: common name=ORF}}
−
{{#set: in pathway=PWY-6763|PWY-1501|PWY-6766|TOLUENE-DEG-CATECHOL-PWY|PWY-6446|PWY-6444}}
+
{{#set: common name=transaldolase}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: ec number=EC-2.2.1.2}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: gene associated=Tiso_gene_17601|Tiso_gene_1831}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: in pathway=PWY-5723|P185-PWY|P124-PWY|PWY-1861|NONOXIPENT-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:48, 21 March 2018

Reaction TRANSALDOL-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • transaldolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-glyceraldehyde 3-phosphate[c] + 1 D-sedoheptulose 7-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-erythrose 4-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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