Difference between revisions of "TRANSALDOL-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HBCHLm HBCHLm] == * direction: ** REVERSIBLE * common name: ** 3-Hydroxybutanoyl-CoA hydro-lyase, m...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** transaldolase...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HBCHLm HBCHLm] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** 3-Hydroxybutanoyl-CoA hydro-lyase, mitochondria
+
** ORF
 +
** transaldolase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[S-3-HYDROXYBUTANOYL-COA]][m] '''<=>''' 1.0 [[WATER]][m] '''+''' 1.0 [[CROTONYL-COA]][m]
+
** 1 [[GAP]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 (S)-3-hydroxybutanoyl-CoA[m] '''<=>''' 1.0 H2O[m] '''+''' 1.0 crotonyl-CoA[m]
+
** 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_5857]]
+
* Gene: [[Tiso_gene_17601]]
−
** Source: [[orthology-creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_16703]]
+
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1831]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P17441 P17441]
 +
** [http://www.uniprot.org/uniprot/P17440 P17440]
 +
** [http://www.uniprot.org/uniprot/P37837 P37837]
 +
** [http://www.uniprot.org/uniprot/P45055 P45055]
 +
** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
 +
** [http://www.uniprot.org/uniprot/P0A867 P0A867]
 +
** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
 +
** [http://www.uniprot.org/uniprot/Q58370 Q58370]
 +
** [http://www.uniprot.org/uniprot/P34214 P34214]
 +
** [http://www.uniprot.org/uniprot/P0A870 P0A870]
 +
** [http://www.uniprot.org/uniprot/P15019 P15019]
 +
** [http://www.uniprot.org/uniprot/P53228 P53228]
 +
** [http://www.uniprot.org/uniprot/P51778 P51778]
 +
** [http://www.uniprot.org/uniprot/P72797 P72797]
 +
** [http://www.uniprot.org/uniprot/O04894 O04894]
 +
** [http://www.uniprot.org/uniprot/P78865 P78865]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=3-Hydroxybutanoyl-CoA hydro-lyase, mitochondria}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_5857|Tiso_gene_16703}}
+
{{#set: common name=transaldolase}}
−
{{#set: in pathway=}}
+
{{#set: ec number=EC-2.2.1.2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_17601|Tiso_gene_1831}}
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
{{#set: in pathway=PWY-5723|P185-PWY|P124-PWY|PWY-1861|NONOXIPENT-PWY}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:48, 21 March 2018

Reaction TRANSALDOL-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • transaldolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-glyceraldehyde 3-phosphate[c] + 1 D-sedoheptulose 7-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-erythrose 4-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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