Difference between revisions of "XANTHOSINE"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.117-RXN 2.4.1.117-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** udp-glucose--undeca...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.117-RXN 2.4.1.117-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
−
** udp-glucose--undecaprenyl-phosphate_glucosyltransferase
+
** tRNA charging
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.4.1.117 EC-2.4.1.117]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''21''' reactions found over '''21''' reactions in the full pathway
−
** 1 [[DOLICHOLP]][c] '''+''' 1 [[CPD-12575]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[CPD-166]][c]
+
* [[ALANINE--TRNA-LIGASE-RXN]]
−
* With common name(s):
+
** 5 associated gene(s):
−
** 1 a dolichyl phosphate[c] '''+''' 1 UDP-α-D-glucose[c] '''=>''' 1 UDP[c] '''+''' 1 a dolichyl β-D-glucosyl phosphate[c]
+
*** [[Tiso_gene_2298]]
−
 
+
*** [[Tiso_gene_3249]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_18607]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_18609]]
−
* [[Tiso_gene_8160]]
+
*** [[Tiso_gene_19573]]
−
** IN-SILICO_ANNOTATION
+
** 3 reconstruction source(s) associated:
−
***EC-NUMBER
+
*** [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[orthology-esiliculosus]]
−
== Pathways  ==
+
* [[ARGININE--TRNA-LIGASE-RXN]]
−
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
+
** 2 associated gene(s):
−
** '''19''' reactions found over '''19''' reactions in the full pathway
+
*** [[Tiso_gene_12997]]
−
== Reconstruction information  ==
+
*** [[Tiso_gene_16360]]
−
* [[orthology]]:
+
** 3 reconstruction source(s) associated:
−
** [[pantograph]]:
+
*** [[annotation-in-silico_annotation]]
−
*** [[athaliana]]
+
*** [[annotation-experimental_annotation]]
−
*** [[esiliculosus]]
+
*** [[orthology-esiliculosus]]
−
* [[annotation]]:
+
* [[ASPARAGINE--TRNA-LIGASE-RXN]]
−
** [[pathwaytools]]:
+
** 5 associated gene(s):
−
*** [[in-silico_annotation]]
+
*** [[Tiso_gene_9303]]
 +
*** [[Tiso_gene_9304]]
 +
*** [[Tiso_gene_9908]]
 +
*** [[Tiso_gene_13908]]
 +
*** [[Tiso_gene_6065]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[ASPARTATE--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_17185]]
 +
*** [[Tiso_gene_7126]]
 +
*** [[Tiso_gene_13081]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[CYSTEINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_10881]]
 +
*** [[Tiso_gene_17657]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[GLURS-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_5379]]
 +
*** [[Tiso_gene_5046]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[GLUTAMINE--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_5915]]
 +
*** [[Tiso_gene_11124]]
 +
*** [[Tiso_gene_7596]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[GLYCINE--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_14743]]
 +
*** [[Tiso_gene_14742]]
 +
*** [[Tiso_gene_3788]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[HISTIDINE--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_12634]]
 +
*** [[Tiso_gene_13414]]
 +
*** [[Tiso_gene_8798]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_12496]]
 +
*** [[Tiso_gene_11779]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[LEUCINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_11524]]
 +
*** [[Tiso_gene_15439]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[LYSINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_6705]]
 +
*** [[Tiso_gene_16635]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[METHIONINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_284]]
 +
*** [[Tiso_gene_406]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PHENYLALANINE--TRNA-LIGASE-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_16467]]
 +
*** [[Tiso_gene_4232]]
 +
*** [[Tiso_gene_16650]]
 +
*** [[Tiso_gene_1625]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PROLINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_11974]]
 +
*** [[Tiso_gene_14791]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-16165]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_406]]
 +
*** [[Tiso_gene_284]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[SERINE--TRNA-LIGASE-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_1682]]
 +
*** [[Tiso_gene_10015]]
 +
*** [[Tiso_gene_1684]]
 +
*** [[Tiso_gene_587]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[THREONINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_13142]]
 +
*** [[Tiso_gene_4406]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_14318]]
 +
*** [[Tiso_gene_14319]]
 +
*** [[Tiso_gene_12988]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[TYROSINE--TRNA-LIGASE-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_4174]]
 +
*** [[Tiso_gene_12171]]
 +
*** [[Tiso_gene_10378]]
 +
*** [[Tiso_gene_4175]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[VALINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_1372]]
 +
*** [[Tiso_gene_8041]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15401 15401]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2759}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01005 R01005]
+
{{#set: taxonomic range=TAX-2}}
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-2157}}
−
** [http://www.uniprot.org/uniprot/P40350 P40350]
+
{{#set: common name=tRNA charging}}
−
** [http://www.uniprot.org/uniprot/Q9UUT0 Q9UUT0]
+
{{#set: reaction found=21}}
−
** [http://www.uniprot.org/uniprot/Q9Y673 Q9Y673]
+
{{#set: total reaction=21}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: completion rate=100.0}}
−
{{#set: common name=udp-glucose--undecaprenyl-phosphate_glucosyltransferase}}
+
−
{{#set: ec number=EC-2.4.1.117}}
+
−
{{#set: gene associated=Tiso_gene_8160}}
+
−
{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 18:54, 18 March 2018

Pathway TRNA-CHARGING-PWY

Reaction(s) found

21 reactions found over 21 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=XANTHOSINE&oldid=20492"