Difference between revisions of "TRNA-Dihydrouridines"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13295 RXN-13295] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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== TISOGEM description ==
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[[Category:Reaction]]
== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13295 RXN-13295] ==
The automatic reconstruction of ''Tisocrysis_lutea'' results to a Genome scale Model containing 2800 reactions, 2746 metabolites, 2728 genes and 1213 pathways. This GeM was obtained based on the following sources:
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* direction:
* Based on annotation data:
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** LEFT-TO-RIGHT
** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools]
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* ec number:
*** Creation of a metabolic network containing 2568 reactions
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** [http://enzyme.expasy.org/EC/2.3.1.199 EC-2.3.1.199]
* Based on orthology data:
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* Synonym(s):
** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
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*** From template ''CREINHARDTII'' creation of a metabolic network containing: 558 reactions
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*** From template ''SYNECHOCYSTIS'' creation of a metabolic network containing: 260 reactions
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*** From template ''ATHALIANA'' creation of a metabolic network containing: 419 reactions
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*** From template ''ESILICULOSUS'' creation of a metabolic network containing: 1191 reactions
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* Based on expertise:
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*** 314 reaction(s) added
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* Based on gap-filling:
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** Tool: [https://pypi.python.org/pypi/meneco meneco]
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*** 21 reaction(s) added
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[[FILE:venn.png|frameless|border]]
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== Reaction Formula ==
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* With identifiers:
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** 1 [[PROTON]][c] '''+''' 1 [[CPD-9965]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[CPD-10283]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* With common name(s):
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** 1 H+[c] '''+''' 1 icosanoyl-CoA[c] '''+''' 1 malonyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 3-oxo-behenoyl-CoA[c] '''+''' 1 CO2[c]
  
== Collaborative curation ==  
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== Genes associated with this reaction  ==
* Suggest reactions to add or remove:
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== Pathways  ==
** Download this [[MEDIA:Add_delete_reaction.csv|from]]
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* [[PWY-7036]], very long chain fatty acid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7036 PWY-7036]
* Suggest new reactions to create and add:
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** '''16''' reactions found over '''16''' reactions in the full pathway
** Download this [[MEDIA:Reaction_creator.csv|form]]
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== Reconstruction information  ==
* '''Follow the examples given in the form to correctly share your suggestions'''
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* [[annotation]]:
* Send the completed form(s) to: CONTACT_MAIL
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.3.1.199}}
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{{#set: in pathway=PWY-7036}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:32, 10 January 2018

Reaction RXN-13295

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-7036, very long chain fatty acid biosynthesis II: PWY-7036
    • 16 reactions found over 16 reactions in the full pathway

Reconstruction information

External links