Difference between revisions of "TYRFUMCAT-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14207 RXN-14207] == * direction: ** REVERSIBLE * common name: ** pyruvate_kinase * ec number: *...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14207 RXN-14207] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
 
* common name:
 
* common name:
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** pyruvate_kinase
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** L-tyrosine degradation I
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.40 EC-2.7.1.40]
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* Synonym(s):
 
* Synonym(s):
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** tyrosine fumarate catabolism
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''5''' reactions in the full pathway
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** 1 [[DGTP]][c] '''+''' 1 [[PYRUVATE]][c] '''<=>''' 1 [[DGDP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PROTON]][c]
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* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 dGTP[c] '''+''' 1 pyruvate[c] '''<=>''' 1 dGDP[c] '''+''' 1 phosphoenolpyruvate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_18977]]
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*** [[Tiso_gene_18976]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_18328]]
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Genes have been associated with this reaction based on different elements listed below.
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** 4 reconstruction source(s) associated:
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* [[Tiso_gene_974]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[FUMARYLACETOACETASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 2 associated gene(s):
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** [[pantograph]]-[[creinhardtii]]
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*** [[Tiso_gene_5675]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[Tiso_gene_2213]]
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* [[Tiso_gene_14504]]
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** 2 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_18206]]
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* [[HOMOGENTISATE-12-DIOXYGENASE-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** 1 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_20095]]
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** [[pantograph]]-[[esiliculosus]]
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_14505]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[TYROSINE-AMINOTRANSFERASE-RXN]]
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== Pathways  ==
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** 3 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_10680]]
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* [[orthology]]:
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*** [[Tiso_gene_6815]]
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** [[pantograph]]:
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*** [[Tiso_gene_17718]]
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*** [[creinhardtii]]
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** 3 reconstruction source(s) associated:
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*** [[esiliculosus]]
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*** [[manual-primary_network]]
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* [[annotation]]:
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*** [[orthology-creinhardtii]]
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** [[pathwaytools]]:
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*** [[orthology-synechocystis]]
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*** [[experimental_annotation]]
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== Reaction(s) not found ==
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*** [[in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALEYLACETOACETATE-ISOMERASE-RXN MALEYLACETOACETATE-ISOMERASE-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* UM-BBD-PWY : tyr
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30794 30794]
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{{#set: taxonomic range=TAX-1224}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01858 R01858]
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{{#set: taxonomic range=TAX-40674}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=L-tyrosine degradation I}}
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{{#set: common name=pyruvate_kinase}}
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{{#set: common name=tyrosine fumarate catabolism}}
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{{#set: ec number=EC-2.7.1.40}}
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{{#set: reaction found=4}}
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{{#set: gene associated=Tiso_gene_974|Tiso_gene_14504|Tiso_gene_18206|Tiso_gene_14505}}
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{{#set: total reaction=5}}
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{{#set: in pathway=}}
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{{#set: completion rate=80.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:16, 21 March 2018

Pathway TYRFUMCAT-PWY

Reaction(s) found

4 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

  • UM-BBD-PWY : tyr





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