Difference between revisions of "Tiso gene 10173"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2142 RXN0-2142] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-(acyl-carrier-pro...")
 
(Created page with "Category:Gene == Gene Tiso_gene_10173 == * right end position: ** 6981 * transcription direction: ** NEGATIVE * left end position: ** 4535 * centisome position: ** 51.8819...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2142 RXN0-2142] ==
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== Gene Tiso_gene_10173 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6981
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* common name:
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* transcription direction:
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** 3-oxoacyl-(acyl-carrier-protein)
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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** 4535
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* centisome position:
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** 51.881935   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2-DEHYDROPANTOATE-REDUCT-RXN]]
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** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[b-Keto-cis-D5-dodecenoyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[b-Hydroxy-cis-D5-dodecenoyl-ACPs]][c]
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** Source: [[orthology-synechocystis]]
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* With common name(s):
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* Reaction: [[ACETOLACTREDUCTOISOM-RXN]]
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** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 a (5Z)-3-oxo-dodec-5-enoyl-[acp][c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R,5Z)-3-hydroxy-dodec-5-enoyl-[acp][c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[ACETOOHBUTREDUCTOISOM-RXN]]
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* [[Tiso_gene_13083]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* Reaction: [[R05068]]
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***EC-NUMBER
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** Source: [[orthology-synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-14106]]
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* [[Tiso_gene_9885]]
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** Source: [[orthology-synechocystis]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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** Source: [[orthology-creinhardtii]]
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* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
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** Source: [[orthology-creinhardtii]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Pathways associated ==
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== Reconstruction information  ==
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* [[PANTO-PWY]]
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* [[orthology]]:
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* [[ILEUSYN-PWY]]
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** [[pantograph]]:
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* [[PWY-6654]]
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*** [[esiliculosus]]
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* [[VALSYN-PWY]]
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* [[annotation]]:
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* [[PWY-7111]]
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** [[pathwaytools]]:
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* [[PWY-5103]]
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=6981}}
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{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: ec number=EC-1.1.1.100}}
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{{#set: left end position=4535}}
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{{#set: gene associated=Tiso_gene_13083|Tiso_gene_9885}}
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{{#set: centisome position=51.881935    }}
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{{#set: in pathway=PWY0-862}}
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{{#set: reaction associated=2-DEHYDROPANTOATE-REDUCT-RXN|ACETOLACTREDUCTOISOM-RXN|ACETOOHBUTREDUCTOISOM-RXN|R05068|RXN-14106}}
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{{#set: reconstruction category=orthology}}
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{{#set: pathway associated=PANTO-PWY|ILEUSYN-PWY|PWY-6654|VALSYN-PWY|PWY-7111|PWY-5103}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:56, 21 March 2018

Gene Tiso_gene_10173

  • right end position:
    • 6981
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 4535
  • centisome position:
    • 51.881935
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10173&oldid=44719"