Difference between revisions of "Tiso gene 105"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15635 RXN-15635] == * direction: ** LEFT-TO-RIGHT * common name: ** ketopantoate_hydroxymethylt...")
(Created page with "Category:Gene == Gene Tiso_gene_105 == * right end position: ** 15375 * transcription direction: ** POSITIVE * left end position: ** 12646 * centisome position: ** 29.1261...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15635 RXN-15635] ==
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== Gene Tiso_gene_105 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 15375
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* common name:
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* transcription direction:
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** ketopantoate_hydroxymethyltransferase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.1.2.11 EC-2.1.2.11]
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** 12646
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* centisome position:
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** 29.126171   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-13729]]
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** 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[METHYLENETETRAHYDROMETHANOPTERIN]][c] '''=>''' 1 [[THMPT]][c] '''+''' 1 [[2-DEHYDROPANTOATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H2O[c] '''+''' 1 5,10-methylene-tetrahydromethanopterin[c] '''=>''' 1 tetrahydromethanopterin[c] '''+''' 1 2-dehydropantoate[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN3DJ-11230]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_14466]]
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* Reaction: [[SGPL11]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***AUTOMATED-NAME-MATCH
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* Reaction: [[SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN]]
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* [[Tiso_gene_14465]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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== Pathways associated ==
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* [[PWY-6654]], phosphopantothenate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6654 PWY-6654]
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* [[PWY-7119]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY3DJ-11470]]
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=15375}}
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{{#set: common name=ketopantoate_hydroxymethyltransferase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: ec number=EC-2.1.2.11}}
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{{#set: left end position=12646}}
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{{#set: gene associated=Tiso_gene_14466|Tiso_gene_14465}}
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{{#set: centisome position=29.126171    }}
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{{#set: in pathway=PWY-6654}}
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{{#set: reaction associated=RXN-13729|RXN3DJ-11230|SGPL11|SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN}}
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{{#set: reconstruction category=orthology}}
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{{#set: pathway associated=PWY-7119|PWY3DJ-11470}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:50, 21 March 2018

Gene Tiso_gene_105

  • right end position:
    • 15375
  • transcription direction:
    • POSITIVE
  • left end position:
    • 12646
  • centisome position:
    • 29.126171
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_105&oldid=44113"