Difference between revisions of "Tiso gene 10738"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAMPYR-RXN PSERTRANSAMPYR-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** phosp...")
 
(Created page with "Category:Gene == Gene Tiso_gene_10738 == * right end position: ** 6551 * transcription direction: ** POSITIVE * left end position: ** 4397 * centisome position: ** 52.7471...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAMPYR-RXN PSERTRANSAMPYR-RXN] ==
+
== Gene Tiso_gene_10738 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 6551
−
* common name:
+
* transcription direction:
−
** ORF
+
** POSITIVE
−
** phosphoserine_aminotransferase
+
* left end position:
−
* ec number:
+
** 4397
−
** [http://enzyme.expasy.org/EC/2.6.1.52 EC-2.6.1.52]
+
* centisome position:
 +
** 52.74712   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ALKAPHOSPHA-RXN]]
−
** 1 [[GLT]][c] '''+''' 1 [[3OH-4P-OH-ALPHA-KETOBUTYRATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-PHOSPHONOOXY-THREONINE]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 L-glutamate[c] '''+''' 1 (3R)-3-hydroxy-2-oxo-4 phosphonooxybutanoate[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 4-phospho-hydroxy-L-threonine[c]
+
* Reaction: [[RXN-5822]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[RXN-8748]]
−
* [[Tiso_gene_15686]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
== Pathways associated ==
−
** EXPERIMENTAL_ANNOTATION
+
* [[PWY-5491]]
−
***EC-NUMBER
+
* [[PWY-5083]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[NADPHOS-DEPHOS-PWY]]
−
* [[Tiso_gene_17123]]
+
* [[NAD-BIOSYNTHESIS-II]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
+
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=6551}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16573 16573]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=4397}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05085 R05085]
+
{{#set: centisome position=52.74712    }}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: reaction associated=ALKAPHOSPHA-RXN|RXN-5822|RXN-8748}}
−
{{#set: common name=ORF}}
+
{{#set: pathway associated=PWY-5491|PWY-5083|NADPHOS-DEPHOS-PWY|NAD-BIOSYNTHESIS-II}}
−
{{#set: common name=phosphoserine_aminotransferase}}
+
−
{{#set: ec number=EC-2.6.1.52}}
+
−
{{#set: gene associated=Tiso_gene_15686|Tiso_gene_17123}}
+
−
{{#set: in pathway=PYRIDOXSYN-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:21, 21 March 2018

Gene Tiso_gene_10738

  • right end position:
    • 6551
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4397
  • centisome position:
    • 52.74712
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10738&oldid=41068"