Difference between revisions of "Tiso gene 10809"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD66-21 CPD66-21] == * smiles: ** CCCCCC=CCC=CC=CC=CC(SCC(C(=O)NCC([O-])=O)[N+])C(CCCC([O-])=O...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAPOXNPHOSPHN-RXN GAPOXNPHOSPHN-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec numbe...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD66-21 CPD66-21] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAPOXNPHOSPHN-RXN GAPOXNPHOSPHN-RXN] ==
−
* smiles:
+
* direction:
−
** CCCCCC=CCC=CC=CC=CC(SCC(C(=O)NCC([O-])=O)[N+])C(CCCC([O-])=O)O
+
** REVERSIBLE
−
* inchi key:
+
−
** InChIKey=YEESKJGWJFYOOK-IJHYULJSSA-M
+
 
* common name:
 
* common name:
−
** leukotriene-D4
+
** ORF
−
* molecular weight:
+
* ec number:
−
** 495.653   
+
** [http://enzyme.expasy.org/EC/1.2.1.12 EC-1.2.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN66-336]]
+
** 1 [[Pi]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[DPG]][c] '''+''' 1 [[PROTON]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 1,3-bisphospho-D-glycerate[c] '''+''' 1 H+[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_20000]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_235]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_10646]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_3344]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6766]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=52940265 52940265]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10300 10300]
−
* CHEBI:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=63166 63166]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01061 R01061]
−
{{#set: smiles=CCCCCC=CCC=CC=CC=CC(SCC(C(=O)NCC([O-])=O)[N+])C(CCCC([O-])=O)O}}
+
* UNIPROT:
−
{{#set: inchi key=InChIKey=YEESKJGWJFYOOK-IJHYULJSSA-M}}
+
** [http://www.uniprot.org/uniprot/P07486 P07486]
−
{{#set: common name=leukotriene-D4}}
+
** [http://www.uniprot.org/uniprot/P08477 P08477]
−
{{#set: molecular weight=495.653    }}
+
** [http://www.uniprot.org/uniprot/P17878 P17878]
−
{{#set: produced by=RXN66-336}}
+
** [http://www.uniprot.org/uniprot/Q01651 Q01651]
 +
** [http://www.uniprot.org/uniprot/Q27890 Q27890]
 +
** [http://www.uniprot.org/uniprot/Q27820 Q27820]
 +
** [http://www.uniprot.org/uniprot/Q7M188 Q7M188]
 +
** [http://www.uniprot.org/uniprot/Q7LZR1 Q7LZR1]
 +
** [http://www.uniprot.org/uniprot/Q58546 Q58546]
 +
** [http://www.uniprot.org/uniprot/P55971 P55971]
 +
** [http://www.uniprot.org/uniprot/P46795 P46795]
 +
** [http://www.uniprot.org/uniprot/P07487 P07487]
 +
** [http://www.uniprot.org/uniprot/Q01558 Q01558]
 +
** [http://www.uniprot.org/uniprot/Q7M187 Q7M187]
 +
** [http://www.uniprot.org/uniprot/O25902 O25902]
 +
** [http://www.uniprot.org/uniprot/Q9JWT8 Q9JWT8]
 +
** [http://www.uniprot.org/uniprot/P29272 P29272]
 +
** [http://www.uniprot.org/uniprot/P47543 P47543]
 +
** [http://www.uniprot.org/uniprot/O83816 O83816]
 +
** [http://www.uniprot.org/uniprot/P20445 P20445]
 +
** [http://www.uniprot.org/uniprot/P26517 P26517]
 +
** [http://www.uniprot.org/uniprot/P09124 P09124]
 +
** [http://www.uniprot.org/uniprot/P00362 P00362]
 +
** [http://www.uniprot.org/uniprot/P00358 P00358]
 +
** [http://www.uniprot.org/uniprot/P00359 P00359]
 +
** [http://www.uniprot.org/uniprot/P00360 P00360]
 +
** [http://www.uniprot.org/uniprot/P00356 P00356]
 +
** [http://www.uniprot.org/uniprot/P0A9B2 P0A9B2]
 +
** [http://www.uniprot.org/uniprot/P0A9B6 P0A9B6]
 +
** [http://www.uniprot.org/uniprot/P17721 P17721]
 +
** [http://www.uniprot.org/uniprot/P04406 P04406]
 +
** [http://www.uniprot.org/uniprot/P17244 P17244]
 +
** [http://www.uniprot.org/uniprot/P04796 P04796]
 +
** [http://www.uniprot.org/uniprot/P19089 P19089]
 +
** [http://www.uniprot.org/uniprot/P26518 P26518]
 +
** [http://www.uniprot.org/uniprot/P26988 P26988]
 +
** [http://www.uniprot.org/uniprot/P04970 P04970]
 +
** [http://www.uniprot.org/uniprot/P17329 P17329]
 +
** [http://www.uniprot.org/uniprot/P17330 P17330]
 +
** [http://www.uniprot.org/uniprot/P17331 P17331]
 +
** [http://www.uniprot.org/uniprot/P08439 P08439]
 +
** [http://www.uniprot.org/uniprot/P00357 P00357]
 +
** [http://www.uniprot.org/uniprot/P16858 P16858]
 +
** [http://www.uniprot.org/uniprot/P26521 P26521]
 +
** [http://www.uniprot.org/uniprot/P26520 P26520]
 +
** [http://www.uniprot.org/uniprot/P26519 P26519]
 +
** [http://www.uniprot.org/uniprot/P04797 P04797]
 +
** [http://www.uniprot.org/uniprot/P25861 P25861]
 +
** [http://www.uniprot.org/uniprot/P00361 P00361]
 +
** [http://www.uniprot.org/uniprot/P09317 P09317]
 +
** [http://www.uniprot.org/uniprot/P22512 P22512]
 +
** [http://www.uniprot.org/uniprot/P22513 P22513]
 +
** [http://www.uniprot.org/uniprot/P10097 P10097]
 +
** [http://www.uniprot.org/uniprot/P17819 P17819]
 +
** [http://www.uniprot.org/uniprot/P28844 P28844]
 +
** [http://www.uniprot.org/uniprot/P08735 P08735]
 +
** [http://www.uniprot.org/uniprot/P09316 P09316]
 +
** [http://www.uniprot.org/uniprot/Q9JX51 Q9JX51]
 +
** [http://www.uniprot.org/uniprot/O67161 O67161]
 +
** [http://www.uniprot.org/uniprot/P44304 P44304]
 +
** [http://www.uniprot.org/uniprot/O34425 O34425]
 +
** [http://www.uniprot.org/uniprot/P64178 P64178]
 +
** [http://www.uniprot.org/uniprot/Q46450 Q46450]
 +
** [http://www.uniprot.org/uniprot/P50321 P50321]
 +
** [http://www.uniprot.org/uniprot/P50322 P50322]
 +
** [http://www.uniprot.org/uniprot/P34917 P34917]
 +
** [http://www.uniprot.org/uniprot/P34918 P34918]
 +
** [http://www.uniprot.org/uniprot/Q07234 Q07234]
 +
** [http://www.uniprot.org/uniprot/P24748 P24748]
 +
** [http://www.uniprot.org/uniprot/P24746 P24746]
 +
** [http://www.uniprot.org/uniprot/P24749 P24749]
 +
** [http://www.uniprot.org/uniprot/P24751 P24751]
 +
** [http://www.uniprot.org/uniprot/P24750 P24750]
 +
** [http://www.uniprot.org/uniprot/Q60143 Q60143]
 +
** [http://www.uniprot.org/uniprot/Q64467 Q64467]
 +
** [http://www.uniprot.org/uniprot/P46406 P46406]
 +
** [http://www.uniprot.org/uniprot/Q59800 Q59800]
 +
** [http://www.uniprot.org/uniprot/P80534 P80534]
 +
** [http://www.uniprot.org/uniprot/Q9UW96 Q9UW96]
 +
** [http://www.uniprot.org/uniprot/P32809 P32809]
 +
** [http://www.uniprot.org/uniprot/P32810 P32810]
 +
** [http://www.uniprot.org/uniprot/P20287 P20287]
 +
** [http://www.uniprot.org/uniprot/P35143 P35143]
 +
** [http://www.uniprot.org/uniprot/P25858 P25858]
 +
** [http://www.uniprot.org/uniprot/P10618 P10618]
 +
** [http://www.uniprot.org/uniprot/Q7M517 Q7M517]
 +
** [http://www.uniprot.org/uniprot/Q7M516 Q7M516]
 +
** [http://www.uniprot.org/uniprot/Q09054 Q09054]
 +
** [http://www.uniprot.org/uniprot/Q43247 Q43247]
 +
** [http://www.uniprot.org/uniprot/P23722 P23722]
 +
** [http://www.uniprot.org/uniprot/P17729 P17729]
 +
** [http://www.uniprot.org/uniprot/Q01597 Q01597]
 +
** [http://www.uniprot.org/uniprot/P32637 P32637]
 +
** [http://www.uniprot.org/uniprot/P29497 P29497]
 +
** [http://www.uniprot.org/uniprot/P32638 P32638]
 +
** [http://www.uniprot.org/uniprot/P32635 P32635]
 +
** [http://www.uniprot.org/uniprot/P32636 P32636]
 +
** [http://www.uniprot.org/uniprot/Q59309 Q59309]
 +
** [http://www.uniprot.org/uniprot/P34783 P34783]
 +
** [http://www.uniprot.org/uniprot/Q00584 Q00584]
 +
** [http://www.uniprot.org/uniprot/Q42671 Q42671]
 +
** [http://www.uniprot.org/uniprot/P34920 P34920]
 +
** [http://www.uniprot.org/uniprot/P39460 P39460]
 +
** [http://www.uniprot.org/uniprot/Q37265 Q37265]
 +
** [http://www.uniprot.org/uniprot/Q37264 Q37264]
 +
** [http://www.uniprot.org/uniprot/Q01077 Q01077]
 +
** [http://www.uniprot.org/uniprot/P54270 P54270]
 +
** [http://www.uniprot.org/uniprot/Q48335 Q48335]
 +
** [http://www.uniprot.org/uniprot/Q43833 Q43833]
 +
** [http://www.uniprot.org/uniprot/Q59906 Q59906]
 +
** [http://www.uniprot.org/uniprot/P46713 P46713]
 +
** [http://www.uniprot.org/uniprot/P75358 P75358]
 +
** [http://www.uniprot.org/uniprot/Q7M2K2 Q7M2K2]
 +
** [http://www.uniprot.org/uniprot/Q43359 Q43359]
 +
** [http://www.uniprot.org/uniprot/O68075 O68075]
 +
** [http://www.uniprot.org/uniprot/Q08060 Q08060]
 +
** [http://www.uniprot.org/uniprot/O49222 O49222]
 +
** [http://www.uniprot.org/uniprot/P34922 P34922]
 +
** [http://www.uniprot.org/uniprot/O04106 O04106]
 +
** [http://www.uniprot.org/uniprot/P49644 P49644]
 +
** [http://www.uniprot.org/uniprot/O32755 O32755]
 +
** [http://www.uniprot.org/uniprot/P34924 P34924]
 +
** [http://www.uniprot.org/uniprot/O59841 O59841]
 +
** [http://www.uniprot.org/uniprot/P78958 P78958]
 +
** [http://www.uniprot.org/uniprot/P54118 P54118]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-1.2.1.12}}
 +
{{#set: gene associated=Tiso_gene_20000|Tiso_gene_235|Tiso_gene_10646|Tiso_gene_3344|Tiso_gene_6766}}
 +
{{#set: in pathway=PWY-1042|PWY66-399|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|SUCSYN-PWY|P124-PWY|ANAGLYCOLYSIS-PWY|P122-PWY|P185-PWY|PWY-5484|PWY-7003}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:06, 21 March 2018

Reaction GAPOXNPHOSPHN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 phosphate[c] + 1 D-glyceraldehyde 3-phosphate[c] + 1 NAD+[c] <=> 1 NADH[c] + 1 1,3-bisphospho-D-glycerate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 10 reactions found over 12 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 8 reactions found over 12 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis): SUCSYN-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 14 reactions found over 18 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 8 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10809&oldid=32361"