Difference between revisions of "Tiso gene 11231"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALDOSE1EPIM-RXN ALDOSE1EPIM-RXN] == * direction: ** REVERSIBLE * common name: ** aldose_1-epimerase...")
(Created page with "Category:Gene == Gene Tiso_gene_11231 == * right end position: ** 2753 * transcription direction: ** POSITIVE * left end position: ** 358 * centisome position: ** 4.508248...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALDOSE1EPIM-RXN ALDOSE1EPIM-RXN] ==
+
== Gene Tiso_gene_11231 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 2753
−
* common name:
+
* transcription direction:
−
** aldose_1-epimerase
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/5.1.3.3 EC-5.1.3.3]
+
** 358
 +
* centisome position:
 +
** 4.5082483   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ACETYLORNTRANSAM-RXN]]
−
** 1 [[GALACTOSE]][c] '''<=>''' 1 [[ALPHA-D-GALACTOSE]][c]
+
−
* With common name(s):
+
−
** 1 &beta;-D-galactose[c] '''<=>''' 1 &alpha;-D-galactose[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Tiso_gene_17734]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: automated-name-match
−
* Gene: [[Tiso_gene_19779]]
+
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: ec-number
−
== Pathways  ==
+
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[GABATRANSAM-RXN]]
 +
** Source: [[orthology-synechocystis]]
 +
* Reaction: [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
 +
** Source: [[orthology-synechocystis]]
 +
* Reaction: [[RXN-15007]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: automated-name-match
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways associated ==
 +
* [[PWY-4321]]
 +
* [[GLUTORN-PWY]]
 +
* [[PWY-6922]]
 +
* [[GLUDEG-I-PWY]]
 +
* [[PWY-6344]]
 +
* [[PWY-3341]]
 +
* [[P181-PWY]]
 +
* [[GLYSYN-ALA-PWY]]
 +
* [[ARGASEDEG-PWY]]
 +
* [[PWY-5022]]
 +
* [[PWY-5154]]
 +
* [[PWY-6536]]
 +
* [[PWY-6535]]
 +
* [[ARGSYNBSUB-PWY]]
 +
* [[PWY-4981]]
 +
* [[PWY-7400]]
 +
* [[PWY-6537]]
 +
* [[ARG-PRO-PWY]]
 +
* [[ARGININE-SYN4-PWY]]
 +
* [[CITRULBIO-PWY]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=2753}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28675 28675]
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: left end position=358}}
−
{{#set: common name=aldose_1-epimerase}}
+
{{#set: centisome position=4.5082483    }}
−
{{#set: ec number=EC-5.1.3.3}}
+
{{#set: reaction associated=ACETYLORNTRANSAM-RXN|ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN|GABATRANSAM-RXN|ORNITHINE-GLU-AMINOTRANSFERASE-RXN|RXN-15007}}
−
{{#set: gene associated=Tiso_gene_17734|Tiso_gene_19779}}
+
{{#set: pathway associated=PWY-4321|GLUTORN-PWY|PWY-6922|GLUDEG-I-PWY|PWY-6344|PWY-3341|P181-PWY|GLYSYN-ALA-PWY|ARGASEDEG-PWY|PWY-5022|PWY-5154|PWY-6536|PWY-6535|ARGSYNBSUB-PWY|PWY-4981|PWY-7400|PWY-6537|ARG-PRO-PWY|ARGININE-SYN4-PWY|CITRULBIO-PWY}}
−
{{#set: in pathway=PWY-6317|PWY66-422}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 20:39, 21 March 2018

Gene Tiso_gene_11231

  • right end position:
    • 2753
  • transcription direction:
    • POSITIVE
  • left end position:
    • 358
  • centisome position:
    • 4.5082483
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11231&oldid=43049"