Difference between revisions of "Tiso gene 11334"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydratase **...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=5Z8Z11Z14Z17Z-EICOSAPENTAENOATE 5Z8Z11Z14Z17Z-EICOSAPENTAENOATE] == * smiles: ** CCC=CCC=CCC=CC...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=5Z8Z11Z14Z17Z-EICOSAPENTAENOATE 5Z8Z11Z14Z17Z-EICOSAPENTAENOATE] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** CCC=CCC=CCC=CCC=CCC=CCCCC(=O)[O-]
 
* common name:
 
* common name:
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** 3-isopropylmalate dehydratase
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** icosapentaenoate
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** ORF
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* inchi key:
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** InChIKey=JAZBEHYOTPTENJ-JLNKQSITSA-M
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* molecular weight:
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** 301.448   
 
* Synonym(s):
 
* Synonym(s):
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** (2R,3S)-3-isopropylmalate hydro-lyase
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** (5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoate
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** β-isopropylmalate dehydratase
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** timnodonic acid
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** α-isopropylmalate isomerase
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** (5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate
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** 3-isopropylmalate hydro-lyase
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** (5Z,8Z,11Z,14Z,17Z)-icosapentaenoic acid
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** EPA
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** (5Z,8Z,11Z,14Z,17Z)-icosapentaenoate
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** eicosapentaenoate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-12978]]
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** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-9451]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-16139]]
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** 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 H2O[c] '''+''' 1 2-isopropylmaleate[c]
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* [[RXN-13431]]
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* [[RXN-13430]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_12778]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245749 25245749]
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* LIGAND-RXN:
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* Wikipedia : Eicosapentaenoate
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** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
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* HMDB : HMDB01999
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{{#set: direction=REVERSIBLE}}
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* CHEBI:
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{{#set: common name=3-isopropylmalate dehydratase}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58562 58562]
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{{#set: common name=ORF}}
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* LIGAND-CPD:
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C06428 C06428]
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{{#set: gene associated=Tiso_gene_12778}}
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{{#set: smiles=CCC=CCC=CCC=CCC=CCC=CCCCC(=O)[O-]}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: common name=icosapentaenoate}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: inchi key=InChIKey=JAZBEHYOTPTENJ-JLNKQSITSA-M}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: molecular weight=301.448    }}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoate|timnodonic acid|(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate|(5Z,8Z,11Z,14Z,17Z)-icosapentaenoic acid|EPA|(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate|eicosapentaenoate}}
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{{#set: consumed by=RXN-12978}}
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{{#set: produced by=RXN-16139|RXN-13431|RXN-13430}}

Revision as of 15:53, 21 March 2018

Metabolite 5Z8Z11Z14Z17Z-EICOSAPENTAENOATE

  • smiles:
    • CCC=CCC=CCC=CCC=CCC=CCCCC(=O)[O-]
  • common name:
    • icosapentaenoate
  • inchi key:
    • InChIKey=JAZBEHYOTPTENJ-JLNKQSITSA-M
  • molecular weight:
    • 301.448
  • Synonym(s):
    • (5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoate
    • timnodonic acid
    • (5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate
    • (5Z,8Z,11Z,14Z,17Z)-icosapentaenoic acid
    • EPA
    • (5Z,8Z,11Z,14Z,17Z)-icosapentaenoate
    • eicosapentaenoate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • PUBCHEM:
  • Wikipedia : Eicosapentaenoate
  • HMDB : HMDB01999
  • CHEBI:
  • LIGAND-CPD:
"CCC=CCC=CCC=CCC=CCC=CCCCC(=O)[O-" cannot be used as a page name in this wiki.




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