Difference between revisions of "Tiso gene 1142"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10773 RXN-10773] == * direction: ** LEFT-TO-RIGHT * common name: ** low_quality_protein:_beta-g...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10773 RXN-10773] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 2-isopropylmalate_synthase_chloroplastic
+
** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
 +
** ORF
 +
** beta-glucosidase-like_chloroplastic
 +
** beta_glucosidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.3.13 EC-2.3.3.13]
+
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CELLOBIOSE]][c] '''=>''' 2 [[Glucopyranose]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H2O[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 H+[c] '''+''' 1 coenzyme A[c] '''+''' 1 (2S)-2-isopropylmalate[c]
+
** 1 H2O[c] '''+''' 1 β-D-cellobiose[c] '''=>''' 2 D-glucopyranose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11453]]
+
* [[Tiso_gene_6187]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* [[Tiso_gene_13306]]
−
** [[pantograph]]-[[synechocystis]]
+
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_15067]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2344]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
* [[Tiso_gene_6188]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2843]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13305]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_3467]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6497]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_8669]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10001]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_6007]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_5836]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_15066]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
+
* [[PWY-6788]], cellulose degradation II (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6788 PWY-6788]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
−
*** [[creinhardtii]]
 
−
*** [[synechocystis]]
 
−
*** [[athaliana]]
 
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
−
* [[manual]]:
 
−
** [[primary_network]]
 
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30682 30682]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01213 R01213]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00026 R00026]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P06208 P06208]
+
−
** [http://www.uniprot.org/uniprot/Q58595 Q58595]
+
−
** [http://www.uniprot.org/uniprot/P09151 P09151]
+
−
** [http://www.uniprot.org/uniprot/Q9PLV9 Q9PLV9]
+
−
** [http://www.uniprot.org/uniprot/Q9JUK6 Q9JUK6]
+
−
** [http://www.uniprot.org/uniprot/Q58787 Q58787]
+
−
** [http://www.uniprot.org/uniprot/P94565 P94565]
+
−
** [http://www.uniprot.org/uniprot/Q9JP75 Q9JP75]
+
−
** [http://www.uniprot.org/uniprot/Q02141 Q02141]
+
−
** [http://www.uniprot.org/uniprot/P48575 P48575]
+
−
** [http://www.uniprot.org/uniprot/O86511 O86511]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=2-isopropylmalate_synthase_chloroplastic}}
+
{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
−
{{#set: ec number=EC-2.3.3.13}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_11453}}
+
{{#set: common name=beta-glucosidase-like_chloroplastic}}
−
{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
+
{{#set: common name=beta_glucosidase}}
 +
{{#set: ec number=EC-3.2.1.21}}
 +
{{#set: gene associated=Tiso_gene_6187|Tiso_gene_13306|Tiso_gene_15067|Tiso_gene_2344|Tiso_gene_6188|Tiso_gene_2843|Tiso_gene_13305|Tiso_gene_3467|Tiso_gene_6497|Tiso_gene_8669|Tiso_gene_10001|Tiso_gene_6007|Tiso_gene_5836|Tiso_gene_15066}}
 +
{{#set: in pathway=PWY-6788}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
{{#set: reconstruction source=esiliculosus}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:56, 10 January 2018

Reaction RXN-10773

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • ORF
    • beta-glucosidase-like_chloroplastic
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 β-D-cellobiose[c] => 2 D-glucopyranose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6788, cellulose degradation II (fungi): PWY-6788
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links








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