Difference between revisions of "Tiso gene 11793"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_12932 == * left end position: ** 4798 * transcription direction: ** NEGATIVE * right end position: ** 6601 * centisome position: ** 72.4554...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHORISMATE-SYNTHASE-RXN CHORISMATE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_12932 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHORISMATE-SYNTHASE-RXN CHORISMATE-SYNTHASE-RXN] ==
−
* left end position:
+
* direction:
−
** 4798
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** chorismate_synthase
−
* right end position:
+
* ec number:
−
** 6601
+
** [http://enzyme.expasy.org/EC/4.2.3.5 EC-4.2.3.5]
−
* centisome position:
+
−
** 72.45545   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[DNA-DIRECTED-RNA-POLYMERASE-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''=>''' 1 [[CHORISMATE]][c] '''+''' 1 [[Pi]][c]
−
***ec-number
+
* With common name(s):
 +
** 1 5-enolpyruvoyl-shikimate 3-phosphate[c] '''=>''' 1 chorismate[c] '''+''' 1 phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_9630]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
== Pathways associated ==
+
** [[pantograph]]-[[creinhardtii]]
 +
== Pathways ==
 +
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=4798}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21020 21020]
−
{{#set: right end position=6601}}
+
* LIGAND-RXN:
−
{{#set: centisome position=72.45545    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01714 R01714]
−
{{#set: reaction associated=DNA-DIRECTED-RNA-POLYMERASE-RXN}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P27793 P27793]
 +
** [http://www.uniprot.org/uniprot/P23353 P23353]
 +
** [http://www.uniprot.org/uniprot/Q9JT81 Q9JT81]
 +
** [http://www.uniprot.org/uniprot/Q58575 Q58575]
 +
** [http://www.uniprot.org/uniprot/P43875 P43875]
 +
** [http://www.uniprot.org/uniprot/Q9PM41 Q9PM41]
 +
** [http://www.uniprot.org/uniprot/Q9CET2 Q9CET2]
 +
** [http://www.uniprot.org/uniprot/P28777 P28777]
 +
** [http://www.uniprot.org/uniprot/Q42885 Q42885]
 +
** [http://www.uniprot.org/uniprot/Q42884 Q42884]
 +
** [http://www.uniprot.org/uniprot/P16280 P16280]
 +
** [http://www.uniprot.org/uniprot/P12008 P12008]
 +
** [http://www.uniprot.org/uniprot/O74413 O74413]
 +
** [http://www.uniprot.org/uniprot/Q12640 Q12640]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=chorismate_synthase}}
 +
{{#set: ec number=EC-4.2.3.5}}
 +
{{#set: gene associated=Tiso_gene_9630}}
 +
{{#set: in pathway=PWY-6163}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 01:03, 19 March 2018

Reaction CHORISMATE-SYNTHASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • chorismate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11793&oldid=28469"