Difference between revisions of "Tiso gene 12322"

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(Pathways)
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
** carotene_isomerase
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** Fe(II) oxidation
** carotenoid_isomerase
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* ec number:
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** [http://enzyme.expasy.org/EC/5.2.1.13 EC-5.2.1.13]
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* Synonym(s):
 
* Synonym(s):
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** iron oxidation
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''3''' reactions found over '''6''' reactions in the full pathway
** 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
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* [[NADH-DEHYDROG-A-RXN]]
* With common name(s):
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** 18 associated gene(s):
** 1 prolycopene[c] '''=>''' 1 all-trans-lycopene[c]
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*** [[Tiso_gene_13075]]
 
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*** [[Tiso_gene_4836]]
== Genes associated with this reaction  ==
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*** [[Tiso_gene_5171]]
Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_359]]
* [[Tiso_gene_13369]]
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*** [[Tiso_gene_15276]]
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_10326]]
***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_18831]]
* [[Tiso_gene_917]]
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*** [[Tiso_gene_4894]]
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_9874]]
***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_18172]]
* [[Tiso_gene_916]]
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*** [[Tiso_gene_18339]]
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_19691]]
***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_2949]]
* [[Tiso_gene_15802]]
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*** [[Tiso_gene_17199]]
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_18707]]
***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_3113]]
* [[Tiso_gene_13367]]
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*** [[Tiso_gene_355]]
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_358]]
***AUTOMATED-NAME-MATCH
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** 4 reconstruction source(s) associated:
* [[Tiso_gene_915]]
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*** [[annotation-experimental_annotation]]
** IN-SILICO_ANNOTATION
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*** [[manual-primary_network]]
***AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
== Pathways  ==
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*** [[orthology-esiliculosus]]
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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* [[RXN-15829]]
** '''8''' reactions found over '''8''' reactions in the full pathway
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** 5 associated gene(s):
 
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*** [[Tiso_gene_7235]]
== Reconstruction information  ==
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*** [[Tiso_gene_9627]]
* Category: [[annotation]]
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*** [[Tiso_gene_4973]]
** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_18330]]
*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_15926]]
 +
** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-15830]]
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** 4 associated gene(s):
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*** [[Tiso_gene_15682]]
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*** [[Tiso_gene_18053]]
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*** [[Tiso_gene_18580]]
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*** [[Tiso_gene_7948]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12075 RXN-12075]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12076 RXN-12076]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15832 RXN-15832]
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: taxonomic range=TAX-2}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
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{{#set: common name=Fe(II) oxidation}}
* LIGAND-RXN:
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{{#set: common name=iron oxidation}}
** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
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{{#set: reaction found=3}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=6}}
{{#set: common name=carotene_isomerase}}
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{{#set: completion rate=50.0}}
{{#set: common name=carotenoid_isomerase}}
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{{#set: ec number=EC-5.2.1.13}}
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{{#set: gene associated=Tiso_gene_13369|Tiso_gene_917|Tiso_gene_916|Tiso_gene_15802|Tiso_gene_13367|Tiso_gene_915}}
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{{#set: in pathway=PWY-6475}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 16:13, 21 March 2018

Pathway PWY-6692

  • taxonomic range:
  • common name:
    • Fe(II) oxidation
  • Synonym(s):
    • iron oxidation

Reaction(s) found

3 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links