Difference between revisions of "Tiso gene 12400"

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(Created page with "Category:Gene == Gene Tiso_gene_8934 == * left end position: ** 5389 * transcription direction: ** NEGATIVE * right end position: ** 8174 * centisome position: ** 55.18124...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10703 RXN-10703] == * direction: ** LEFT-TO-RIGHT * common name: ** hydroxyacyl-coenzyme_a_dehy...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_8934 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10703 RXN-10703] ==
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* left end position:
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* direction:
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** 5389
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
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* right end position:
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** 3-hydroxyacyl-_dehydrogenase
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** 8174
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** hydroxyacyl-coenzyme_a_mitochondrial
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* centisome position:
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* ec number:
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** 55.18124   
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[DAHPSYN-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[CPD-11527]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[CPD-11528]][c] '''+''' 1 [[PROTON]][c]
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***ec-number
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* With common name(s):
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== Pathways associated ==
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** 1 OPC4-3-hydroxyacyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 OPC4-3-ketoacyl-CoA[c] '''+''' 1 H+[c]
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* [[PWY-6164]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_18838]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14262]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5857]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14026]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14027]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18839]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
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** '''15''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=5389}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
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{{#set: right end position=8174}}
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{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
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{{#set: centisome position=55.18124    }}
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{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
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{{#set: reaction associated=DAHPSYN-RXN}}
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{{#set: ec number=EC-1.1.1.35}}
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{{#set: pathway associated=PWY-6164}}
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{{#set: gene associated=Tiso_gene_18838|Tiso_gene_14262|Tiso_gene_5857|Tiso_gene_14026|Tiso_gene_14027|Tiso_gene_18839}}
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{{#set: in pathway=PWY-735}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:56, 10 January 2018

Reaction RXN-10703

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
    • 3-hydroxyacyl-_dehydrogenase
    • hydroxyacyl-coenzyme_a_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 OPC4-3-hydroxyacyl-CoA[c] + 1 NAD+[c] => 1 NADH[c] + 1 OPC4-3-ketoacyl-CoA[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-735, jasmonic acid biosynthesis: PWY-735
    • 15 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12400&oldid=15347"