Difference between revisions of "Tiso gene 12400"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAPHTHOATE-SYN-RXN NAPHTHOATE-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11354 RXN-11354] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NAPHTHOATE-SYN-RXN NAPHTHOATE-SYN-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11354 RXN-11354] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.3.36 EC-4.1.3.36]
+
** [http://enzyme.expasy.org/EC/5.2.1.12 EC-5.2.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[CPD-6972]][c] '''=>''' 1 [[CPD-9925]][c] '''+''' 1 [[WATER]][c]
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** 1 [[CPD-7535]][c] '''=>''' 1 [[CPD-7526]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 4-(2'-carboxyphenyl)-4-oxobutyryl-CoA[c] '''=>''' 1 1,4-dihydroxy-2-naphthoyl-CoA[c] '''+''' 1 H2O[c]
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** 1 9,15,9'-tri-cis-ζ-carotene[c] '''=>''' 1 9,9'-di-cis-ζ-carotene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_14257]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
* [[Tiso_gene_19690]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
* [[Tiso_gene_16145]]
 
−
** [[pantograph]]-[[synechocystis]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5837]], 1,4-dihydroxy-2-naphthoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5837 PWY-5837]
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[manual]]
−
** Source: [[orthology-athaliana]]
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** Source: [[manual-reactions_pwy-6475_tiso_add]]
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*** Tool: [[pantograph]]
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*** Comment: [[reaction added to complete pwy-6475]]
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26562 26562]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30970 30970]
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* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R07263 R07263]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9CHK2 Q9CHK2]
+
−
** [http://www.uniprot.org/uniprot/P44960 P44960]
+
−
** [http://www.uniprot.org/uniprot/P0ABU0 P0ABU0]
+
−
** [http://www.uniprot.org/uniprot/P23966 P23966]
+
−
** [http://www.uniprot.org/uniprot/Q59464 Q59464]
+
−
** [http://www.uniprot.org/uniprot/P73495 P73495]
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{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-4.1.3.36}}
+
{{#set: ec number=EC-5.2.1.12}}
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{{#set: gene associated=Tiso_gene_14257|Tiso_gene_19690|Tiso_gene_16145}}
+
{{#set: in pathway=PWY-6475}}
−
{{#set: in pathway=PWY-5837}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-reactions_pwy-6475_tiso_add}}
−
{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis}}
+
{{#set: reconstruction comment=reaction added to complete pwy-6475}}
−
{{#set: reconstruction tool=pantograph}}
+

Revision as of 16:41, 21 March 2018

Reaction RXN-11354

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 9,15,9'-tri-cis-ζ-carotene[c] => 1 9,9'-di-cis-ζ-carotene[c]

Genes associated with this reaction

Pathways

  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




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