Difference between revisions of "Tiso gene 12499"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSDECARBOX-RXN LYSDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.ex...")
(Created page with "Category:Gene == Gene Tiso_gene_4160 == * right end position: ** 6182 * transcription direction: ** POSITIVE * left end position: ** 3380 * centisome position: ** 22.06410...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSDECARBOX-RXN LYSDECARBOX-RXN] ==
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== Gene Tiso_gene_4160 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6182
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/4.1.1.18 EC-4.1.1.18]
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** POSITIVE
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* left end position:
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** 3380
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* centisome position:
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** 22.064104   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.5.1.9-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[LYS]][c] '''=>''' 1 [[CADAVERINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 H+[c] '''+''' 1 L-lysine[c] '''=>''' 1 cadaverine[c] '''+''' 1 CO2[c]
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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* [[LYSINE-DEG1-PWY]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10395]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[PWY0-461]], L-lysine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-461 PWY0-461]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-5468]], lupanine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5468 PWY-5468]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6381]], bisucaberin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6381 PWY-6381]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY0-1303]], aminopropylcadaverine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1303 PWY0-1303]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6328]], L-lysine degradation X: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6328 PWY-6328]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6375]], desferrioxamine E biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6375 PWY-6375]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6376]], desferrioxamine B biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6376 PWY-6376]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6182}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22352 22352]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3380}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00462 R00462]
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{{#set: centisome position=22.064104    }}
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* UNIPROT:
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{{#set: reaction associated=1.5.1.9-RXN}}
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** [http://www.uniprot.org/uniprot/P05033 P05033]
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{{#set: pathway associated=LYSINE-DEG1-PWY}}
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** [http://www.uniprot.org/uniprot/P21885 P21885]
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** [http://www.uniprot.org/uniprot/P0A9H3 P0A9H3]
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** [http://www.uniprot.org/uniprot/P52095 P52095]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.1.1.18}}
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{{#set: gene associated=Tiso_gene_10395}}
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{{#set: in pathway=PWY0-461|PWY-5468|PWY-6381|PWY0-1303|PWY-6328|PWY-6375|PWY-6376}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 17:04, 21 March 2018

Gene Tiso_gene_4160

  • right end position:
    • 6182
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3380
  • centisome position:
    • 22.064104
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12499&oldid=38508"