Difference between revisions of "Tiso gene 12778"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METBALT-RXN METBALT-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
(Created page with "Category:Gene == Gene Tiso_gene_12778 == * right end position: ** 6172 * transcription direction: ** POSITIVE * left end position: ** 62 * centisome position: ** 0.9228937...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METBALT-RXN METBALT-RXN] ==
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== Gene Tiso_gene_12778 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6172
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/4.3.1 EC-4.3.1]
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** POSITIVE
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* left end position:
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** 62
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* centisome position:
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** 0.92289376   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3-ISOPROPYLMALISOM-RXN]]
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** 1 [[O-SUCCINYL-L-HOMOSERINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SUC]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 O-succinyl-L-homoserine[c] '''+''' 1 H2O[c] '''=>''' 1 2-oxobutanoate[c] '''+''' 1 ammonium[c] '''+''' 1 H+[c] '''+''' 1 succinate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_3732]]
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* Reaction: [[HOMOACONITATE-HYDRATASE-RXN]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-13163]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways ==
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*** Assignment: ec-number
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== Reconstruction information  ==
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** Source: [[annotation-experimental_annotation]]
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* [[orthology]]:
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*** Assignment: ec-number
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** [[pantograph]]:
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* Reaction: [[RXN-13722]]
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*** [[creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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*** [[esiliculosus]]
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* Reaction: [[RXN-8991]]
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*** [[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-3081]]
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* [[LYSINE-AMINOAD-PWY]]
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* [[P241-PWY]]
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* [[LEUSYN-PWY]]
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* [[PWY-6871]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=6172}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00999 R00999]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=62}}
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{{#set: ec number=EC-4.3.1}}
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{{#set: centisome position=0.92289376    }}
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{{#set: gene associated=Tiso_gene_3732}}
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{{#set: reaction associated=3-ISOPROPYLMALISOM-RXN|HOMOACONITATE-HYDRATASE-RXN|RXN-13163|RXN-13722|RXN-8991}}
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{{#set: in pathway=}}
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{{#set: pathway associated=PWY-3081|LYSINE-AMINOAD-PWY|P241-PWY|LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus|athaliana}}
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Latest revision as of 21:08, 21 March 2018

Gene Tiso_gene_12778

  • right end position:
    • 6172
  • transcription direction:
    • POSITIVE
  • left end position:
    • 62
  • centisome position:
    • 0.92289376
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12778&oldid=46187"