Difference between revisions of "Tiso gene 12889"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: **...")
(Created page with "Category:Gene == Gene Tiso_gene_12889 == * right end position: ** 3613 * transcription direction: ** POSITIVE * left end position: ** 1011 * centisome position: ** 15.1870...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] ==
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== Gene Tiso_gene_12889 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3613
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/5.4.99.17 EC-5.4.99.17]
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** 1011
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* centisome position:
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** 15.18702   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ASPAMINOTRANS-RXN]]
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** 1 [[SQUALENE]][c] '''=>''' 1 [[HOP-2229-ENE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 squalene[c] '''=>''' 1 hop-22(29)-ene[c]
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* Reaction: [[RXN-10814]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-11737]]
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* [[Tiso_gene_12198]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-13697]]
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== Pathways ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
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*** Assignment: automated-name-match
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** '''1''' reactions found over '''14''' reactions in the full pathway
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== Pathways associated ==
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* [[PWY-6098]], diploterol and cycloartenol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098]
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* [[PWY-5913]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6318]]
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== Reconstruction information  ==
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* [[PWY-7383]]
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* [[annotation]]:
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* [[ASPARTATE-DEG1-PWY]]
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** [[pathwaytools]]:
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* [[PWY-6643]]
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*** [[in-silico_annotation]]
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* [[PWY-6642]]
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* [[PWY-6638]]
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* [[ASPARTATESYN-PWY]]
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* [[PWY-7117]]
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* [[GLUTDEG-PWY]]
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* [[PWY-7115]]
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* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
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* [[ASPARAGINE-DEG1-PWY-1]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3613}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17637 17637]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1011}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07322 R07322]
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{{#set: centisome position=15.18702    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ASPAMINOTRANS-RXN|RXN-10814|RXN-11737|RXN-13697}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=PWY-5913|PWY-6318|PWY-7383|ASPARTATE-DEG1-PWY|PWY-6643|PWY-6642|PWY-6638|ASPARTATESYN-PWY|PWY-7117|GLUTDEG-PWY|PWY-7115|MALATE-ASPARTATE-SHUTTLE-PWY|ASPARAGINE-DEG1-PWY-1}}
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{{#set: ec number=EC-5.4.99.17}}
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{{#set: gene associated=Tiso_gene_12198}}
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{{#set: in pathway=PWY-7072|PWY-6098}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:33, 21 March 2018

Gene Tiso_gene_12889

  • right end position:
    • 3613
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1011
  • centisome position:
    • 15.18702
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12889&oldid=42358"