Difference between revisions of "Tiso gene 12899"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.37-RXN 3.2.1.37-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Beta-xylosidase/alpha...")
(Created page with "Category:Gene == Gene Tiso_gene_12899 == * right end position: ** 6537 * transcription direction: ** NEGATIVE * left end position: ** 3684 * centisome position: ** 55.3984...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.37-RXN 3.2.1.37-RXN] ==
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== Gene Tiso_gene_12899 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6537
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* common name:
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* transcription direction:
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** Beta-xylosidase/alpha-L-arabinofuranosidase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.2.1.37 EC-3.2.1.37]
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** 3684
 +
* centisome position:
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** 55.398495   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADPA]]
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** n [[WATER]][c] '''+''' 1 [[1-4-D-xylooligosaccharides]][c] '''=>''' n [[BETA-D-XYLOSE]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[APYRASE-RXN]]
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** n H2O[c] '''+''' 1 a (1->4)-β-D-xylan oligosaccharide[c] '''=>''' n β-D-xylopyranose[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_10897]]
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* Reaction: [[ATPASE-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
** Source: [[orthology-creinhardtii]]
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* Reaction: [[ATPPH]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[CTPH]]
 +
** Source: [[orthology-creinhardtii]]
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* Reaction: [[DTNH]]
 +
** Source: [[orthology-creinhardtii]]
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* Reaction: [[GDPA]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[GTPA]]
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** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[GUANOSINE-DIPHOSPHATASE-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[NUCLEOSIDE-DIPHOSPHATASE-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-10862]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-12195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-12196]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-12197]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-12198]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-12199]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-12200]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14003]]
 +
** Source: [[orthology-athaliana]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-14024]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14187]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14198]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14199]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14200]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14201]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14205]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14208]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14213]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-14214]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14215]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14216]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14217]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14218]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14219]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
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* Reaction: [[RXN-14220]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
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* Reaction: [[RXN0-3542]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN0-5073]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN0-5462]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
−
== Pathways  ==
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** Source: [[orthology-athaliana]]
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== Reconstruction information  ==
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** Source: [[orthology-esiliculosus]]
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* Category: [[annotation]]
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* Reaction: [[THYMIDINE-TRIPHOSPHATASE-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
 +
* Reaction: [[UPH]]
 +
** Source: [[orthology-creinhardtii]]
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* Reaction: [[UTPH]]
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** Source: [[orthology-creinhardtii]]
 +
== Pathways associated ==
 +
* [[PWY-7210]]
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* [[PWY-7198]]
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* [[PWY-7177]]
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* [[PWY-7185]]
 +
* [[PWY-7184]]
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* [[PWY-6545]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
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{{#set: right end position=6537}}
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** [http://www.uniprot.org/uniprot/P45982 P45982]
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.uniprot.org/uniprot/Q9CFH1 Q9CFH1]
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{{#set: left end position=3684}}
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** [http://www.uniprot.org/uniprot/P77713 P77713]
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{{#set: centisome position=55.398495    }}
−
** [http://www.uniprot.org/uniprot/P94489 P94489]
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{{#set: reaction associated=ADPA|APYRASE-RXN|ATPASE-RXN|ATPPH|CTPH|DTNH|GDPA|GTPA|GUANOSINE-DIPHOSPHATASE-RXN|NUCLEOSIDE-DIPHOSPHATASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-10862|RXN-12195|RXN-12196|RXN-12197|RXN-12198|RXN-12199|RXN-12200|RXN-14003|RXN-14024|RXN-14187|RXN-14195|RXN-14198|RXN-14199|RXN-14200|RXN-14201|RXN-14205|RXN-14208|RXN-14213|RXN-14214|RXN-14215|RXN-14216|RXN-14217|RXN-14218|RXN-14219|RXN-14220|RXN0-3542|RXN0-5073|RXN0-5462|THYMIDINE-TRIPHOSPHATASE-RXN|UPH|UTPH}}
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** [http://www.uniprot.org/uniprot/P45702 P45702]
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7177|PWY-7185|PWY-7184|PWY-6545}}
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** [http://www.uniprot.org/uniprot/P48790 P48790]
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−
** [http://www.uniprot.org/uniprot/P07129 P07129]
+
−
** [http://www.uniprot.org/uniprot/Q7M0Q6 Q7M0Q6]
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−
** [http://www.uniprot.org/uniprot/P36906 P36906]
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−
** [http://www.uniprot.org/uniprot/P49943 P49943]
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−
** [http://www.uniprot.org/uniprot/O42698 O42698]
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−
** [http://www.uniprot.org/uniprot/P23552 P23552]
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−
{{#set: direction=LEFT-TO-RIGHT}}
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−
{{#set: common name=Beta-xylosidase/alpha-L-arabinofuranosidase}}
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−
{{#set: ec number=EC-3.2.1.37}}
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−
{{#set: gene associated=Tiso_gene_10897}}
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−
{{#set: in pathway=}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction source=annotation-experimental_annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 21:23, 21 March 2018

Gene Tiso_gene_12899

  • right end position:
    • 6537
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 3684
  • centisome position:
    • 55.398495
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12899&oldid=48380"