Difference between revisions of "Tiso gene 13940"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_8 == * Synonym(s): == Reactions associated == * RXN-5961 ** pantograph-creinhardtii * RXN-5962 ** pantograph-creinha...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_8 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] ==
 +
* direction:
 +
** REVERSIBLE
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.1.3.3 EC-2.1.3.3]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[RXN-5961]]
+
* With identifiers:
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
−
* [[RXN-5962]]
+
* With common name(s):
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 carbamoyl phosphate[c] '''+''' 1 L-ornithine[c] '''<=>''' 1 L-citrulline[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
−
* [[UNSPECIFIC-MONOOXYGENASE-RXN]]
+
 
−
** [[pantograph]]-[[esiliculosus]]
+
== Genes associated with this reaction  ==
−
== Pathways associated ==
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[PWY-5947]]
+
* Gene: [[Tiso_gene_18444]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways  ==
 +
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[CITRULLINE-DEG-PWY]], L-citrulline degradation: [http://metacyc.org/META/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: reaction associated=RXN-5961|RXN-5962|UNSPECIFIC-MONOOXYGENASE-RXN}}
+
* RHEA:
−
{{#set: pathway associated=PWY-5947}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19513 19513]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q58291 Q58291]
 +
** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1]
 +
** [http://www.uniprot.org/uniprot/Q7M182 Q7M182]
 +
** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4]
 +
** [http://www.uniprot.org/uniprot/P11727 P11727]
 +
** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4]
 +
** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14]
 +
** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6]
 +
** [http://www.uniprot.org/uniprot/P44770 P44770]
 +
** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9]
 +
** [http://www.uniprot.org/uniprot/P11066 P11066]
 +
** [http://www.uniprot.org/uniprot/P11803 P11803]
 +
** [http://www.uniprot.org/uniprot/P18186 P18186]
 +
** [http://www.uniprot.org/uniprot/P05150 P05150]
 +
** [http://www.uniprot.org/uniprot/P14995 P14995]
 +
** [http://www.uniprot.org/uniprot/P06960 P06960]
 +
** [http://www.uniprot.org/uniprot/P04391 P04391]
 +
** [http://www.uniprot.org/uniprot/P00480 P00480]
 +
** [http://www.uniprot.org/uniprot/P11725 P11725]
 +
** [http://www.uniprot.org/uniprot/P21302 P21302]
 +
** [http://www.uniprot.org/uniprot/P11724 P11724]
 +
** [http://www.uniprot.org/uniprot/P08308 P08308]
 +
** [http://www.uniprot.org/uniprot/P68747 P68747]
 +
** [http://www.uniprot.org/uniprot/P00481 P00481]
 +
** [http://www.uniprot.org/uniprot/P31317 P31317]
 +
** [http://www.uniprot.org/uniprot/Q01322 Q01322]
 +
** [http://www.uniprot.org/uniprot/Q01323 Q01323]
 +
** [http://www.uniprot.org/uniprot/Q01324 Q01324]
 +
** [http://www.uniprot.org/uniprot/Q01326 Q01326]
 +
** [http://www.uniprot.org/uniprot/Q01325 Q01325]
 +
** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3]
 +
** [http://www.uniprot.org/uniprot/Q01327 Q01327]
 +
** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9]
 +
** [http://www.uniprot.org/uniprot/Q02047 Q02047]
 +
** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9]
 +
** [http://www.uniprot.org/uniprot/Q48296 Q48296]
 +
** [http://www.uniprot.org/uniprot/P75473 P75473]
 +
** [http://www.uniprot.org/uniprot/Q49080 Q49080]
 +
** [http://www.uniprot.org/uniprot/Q43814 Q43814]
 +
** [http://www.uniprot.org/uniprot/O53089 O53089]
 +
** [http://www.uniprot.org/uniprot/O50039 O50039]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-2.1.3.3}}
 +
{{#set: gene associated=Tiso_gene_18444}}
 +
{{#set: in pathway=ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4981|PWY-7400|CITRULLINE-DEG-PWY|CITRULBIO-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:33, 21 March 2018

Reaction ORNCARBAMTRANSFER-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 carbamoyl phosphate[c] + 1 L-ornithine[c] <=> 1 L-citrulline[c] + 1 H+[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-4981, L-proline biosynthesis II (from arginine): PWY-4981
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • CITRULLINE-DEG-PWY, L-citrulline degradation: CITRULLINE-DEG-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis: CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13940&oldid=34845"