Difference between revisions of "Tiso gene 14183"

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(Created page with "Category:Gene == Gene Tiso_gene_8461 == * left end position: ** 1154 * transcription direction: ** NEGATIVE * right end position: ** 5172 * centisome position: ** 11.30153...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** delta-ami...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_8461 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] ==
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* left end position:
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* direction:
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** 1154
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** delta-aminolevulinic_acid_dehydratase_chloroplastic
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* right end position:
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* ec number:
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** 5172
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** [http://enzyme.expasy.org/EC/4.2.1.24 EC-4.2.1.24]
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* centisome position:
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** 11.3015375   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ATPASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
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***ec-number
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* With common name(s):
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** 2 5-aminolevulinate[c] '''=>''' 1 porphobilinogen[c] '''+''' 1 H+[c] '''+''' 2 H2O[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[RXN-12195]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_13382]]
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***ec-number
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** IN-SILICO_ANNOTATION
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* [[RXN-12196]]
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***EC-NUMBER
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** in-silico_annotation
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** EXPERIMENTAL_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN0-5462]]
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** [[pantograph]]-[[athaliana]]
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** in-silico_annotation
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** [[pantograph]]-[[synechocystis]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-7184]]
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== Pathways  ==
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* [[PWY-7198]]
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* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
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* [[PWY-6545]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7210]]
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* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1154}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
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{{#set: right end position=5172}}
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* LIGAND-RXN:
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{{#set: centisome position=11.3015375    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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* UNIPROT:
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/P06214 P06214]
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** [http://www.uniprot.org/uniprot/P13716 P13716]
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** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
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** [http://www.uniprot.org/uniprot/P30124 P30124]
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** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
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** [http://www.uniprot.org/uniprot/P30950 P30950]
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** [http://www.uniprot.org/uniprot/Q60178 Q60178]
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** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
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** [http://www.uniprot.org/uniprot/Q59295 Q59295]
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** [http://www.uniprot.org/uniprot/Q02250 Q02250]
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** [http://www.uniprot.org/uniprot/P10518 P10518]
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** [http://www.uniprot.org/uniprot/Q43148 Q43148]
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** [http://www.uniprot.org/uniprot/Q42682 Q42682]
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** [http://www.uniprot.org/uniprot/Q43058 Q43058]
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** [http://www.uniprot.org/uniprot/Q59643 Q59643]
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** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
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** [http://www.uniprot.org/uniprot/P05373 P05373]
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** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
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** [http://www.uniprot.org/uniprot/Q42836 Q42836]
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** [http://www.uniprot.org/uniprot/P43210 P43210]
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** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=delta-aminolevulinic_acid_dehydratase_chloroplastic}}
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{{#set: ec number=EC-4.2.1.24}}
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{{#set: gene associated=Tiso_gene_13382}}
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{{#set: in pathway=PWY-5189|PWY-5188}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 19:48, 18 March 2018

Reaction PORPHOBILSYNTH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • delta-aminolevulinic_acid_dehydratase_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine): PWY-5189
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate): PWY-5188
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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