Difference between revisions of "Tiso gene 14183"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** delta-ami...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] == * direction: ** LEFT-TO-RIGHT * common name: ** ump-cmp_kinase ** cytidylat...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PORPHOBILSYNTH-RXN PORPHOBILSYNTH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** delta-aminolevulinic_acid_dehydratase_chloroplastic
+
** ump-cmp_kinase
 +
** cytidylate_kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.24 EC-4.2.1.24]
+
** [http://enzyme.expasy.org/EC/2.7.4.22 EC-2.7.4.22]
 +
** [http://enzyme.expasy.org/EC/2.7.4.14 EC-2.7.4.14]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 5-aminolevulinate[c] '''=>''' 1 porphobilinogen[c] '''+''' 1 H+[c] '''+''' 2 H2O[c]
+
** 1 ATP[c] '''+''' 1 UMP[c] '''=>''' 1 UDP[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13382]]
+
* Gene: [[Tiso_gene_17057]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_14116]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_2386]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9739]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_19734]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
+
* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
Line 44: Line 54:
 
** Source: [[manual-primary_network]]
 
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24400 24400]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00158 R00158]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P06214 P06214]
+
−
** [http://www.uniprot.org/uniprot/P13716 P13716]
+
−
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
+
−
** [http://www.uniprot.org/uniprot/P30124 P30124]
+
−
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
+
−
** [http://www.uniprot.org/uniprot/P30950 P30950]
+
−
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
+
−
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
+
−
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
+
−
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
+
−
** [http://www.uniprot.org/uniprot/P10518 P10518]
+
−
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
+
−
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
+
−
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
+
−
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
+
−
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
+
−
** [http://www.uniprot.org/uniprot/P05373 P05373]
+
−
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
+
−
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
+
−
** [http://www.uniprot.org/uniprot/P43210 P43210]
+
−
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=delta-aminolevulinic_acid_dehydratase_chloroplastic}}
+
{{#set: common name=ump-cmp_kinase}}
−
{{#set: ec number=EC-4.2.1.24}}
+
{{#set: common name=cytidylate_kinase}}
−
{{#set: gene associated=Tiso_gene_13382}}
+
{{#set: ec number=EC-2.7.4.22}}
−
{{#set: in pathway=PWY-5189|PWY-5188}}
+
{{#set: ec number=EC-2.7.4.14}}
 +
{{#set: gene associated=Tiso_gene_17057|Tiso_gene_14116|Tiso_gene_2386|Tiso_gene_9739|Tiso_gene_19734}}
 +
{{#set: in pathway=PWY-7176}}
 
{{#set: reconstruction category=orthology|manual|annotation}}
 
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:49, 21 March 2018

Reaction RXN-12002

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ump-cmp_kinase
    • cytidylate_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 UMP[c] => 1 UDP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7176, UTP and CTP de novo biosynthesis: PWY-7176
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14183&oldid=36546"