Difference between revisions of "Tiso gene 14187"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-147 RXN1F-147] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Gene == Gene Tiso_gene_14187 == * right end position: ** 3477 * transcription direction: ** NEGATIVE * left end position: ** 327 * centisome position: ** 5.641822...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-147 RXN1F-147] ==
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== Gene Tiso_gene_14187 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3477
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/5.5.1.18 EC-5.5.1.18]
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** NEGATIVE
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* left end position:
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** 327
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* centisome position:
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** 5.641822   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.1.3.37-RXN]]
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** 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-115]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 all-trans-lycopene[c] '''=>''' 1 δ-carotene[c]
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* Reaction: [[1.1.3.41-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-9926]]
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* [[Tiso_gene_8263]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: automated-name-match
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[UDPNACETYLMURAMATEDEHYDROG-RXN]]
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* [[Tiso_gene_1547]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: ec-number
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* [[Tiso_gene_11980]]
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== Pathways associated ==
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** [[pantograph]]-[[athaliana]]
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* [[PWY3O-6]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-6386]]
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-6387]]
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* [[Tiso_gene_3577]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4457]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_6282]]
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** [[pantograph]]-[[athaliana]]
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== Pathways ==
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* [[PWY-5946]], δ-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5946 PWY-5946]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=3477}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06963 R06963]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=327}}
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{{#set: ec number=EC-5.5.1.18}}
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{{#set: centisome position=5.641822    }}
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{{#set: gene associated=Tiso_gene_8263|Tiso_gene_1547|Tiso_gene_11980|Tiso_gene_3577|Tiso_gene_4457|Tiso_gene_6282}}
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{{#set: reaction associated=1.1.3.37-RXN|1.1.3.41-RXN|RXN-9926|UDPNACETYLMURAMATEDEHYDROG-RXN}}
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{{#set: in pathway=PWY-5946}}
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{{#set: pathway associated=PWY3O-6|PWY-6386|PWY-6387}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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Latest revision as of 21:21, 21 March 2018

Gene Tiso_gene_14187

  • right end position:
    • 3477
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 327
  • centisome position:
    • 5.641822
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14187&oldid=48107"