Difference between revisions of "Tiso gene 14788"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Gene == Gene Tiso_gene_14788 == * right end position: ** 4327 * transcription direction: ** POSITIVE * left end position: ** 470 * centisome position: ** 8.665192...")
 
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[[Category:Pathway]]
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[[Category:Gene]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] ==
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== Gene Tiso_gene_14788 ==
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* taxonomic range:
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* right end position:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** 4327
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* transcription direction:
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* common name:
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** POSITIVE
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** superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
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* left end position:
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** 470
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* centisome position:
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** 8.665192   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reactions associated ==
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'''12''' reactions found over '''17''' reactions in the full pathway
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* Reaction: [[GCVT-RXN]]
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* [[CDPREDUCT-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 4 associated gene(s):
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*** Assignment: ec-number
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*** [[Tiso_gene_10617]]
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* Reaction: [[RXN66-577]]
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*** [[Tiso_gene_9916]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_9915]]
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*** Assignment: automated-name-match
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*** [[Tiso_gene_10138]]
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* Reaction: [[SARCOSINE-DEHYDROGENASE-RXN]]
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** 6 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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*** [[orthology-esiliculosus]]
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== Pathways associated ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-4722]]
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*** [[orthology-athaliana]]
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* [[CRNFORCAT-PWY]]
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*** [[orthology-synechocystis]]
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* [[PWY-3661-1]]
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*** [[manual-primary_network]]
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* [[GLYCLEAV-PWY]]
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* [[DCDPKIN-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_9290]]
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*** [[Tiso_gene_17271]]
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*** [[Tiso_gene_17272]]
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*** [[Tiso_gene_195]]
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*** [[Tiso_gene_18224]]
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*** [[Tiso_gene_16529]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[DTDPKIN-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_18224]]
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*** [[Tiso_gene_16529]]
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*** [[Tiso_gene_195]]
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*** [[Tiso_gene_17271]]
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*** [[Tiso_gene_17272]]
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*** [[Tiso_gene_9290]]
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** 6 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[DTMPKI-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_3755]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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* [[DUDPKIN-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_17272]]
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*** [[Tiso_gene_16529]]
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*** [[Tiso_gene_18224]]
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*** [[Tiso_gene_195]]
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−
*** [[Tiso_gene_9290]]
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−
*** [[Tiso_gene_17271]]
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−
** 6 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[DUTP-PYROP-RXN]]
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−
** 2 associated gene(s):
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*** [[Tiso_gene_18793]]
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*** [[Tiso_gene_18792]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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* [[PWY-7184]]
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** 0 associated gene:
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* [[PWY-7187]]
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** 0 associated gene:
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* [[RIBONUCLEOSIDE-DIP-REDUCTII-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_9915]]
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*** [[Tiso_gene_10138]]
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*** [[Tiso_gene_9916]]
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*** [[Tiso_gene_10617]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-722]]
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** 4 associated gene(s):
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*** [[Tiso_gene_10617]]
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*** [[Tiso_gene_10138]]
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*** [[Tiso_gene_9915]]
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*** [[Tiso_gene_9916]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[THYMIDYLATESYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_7708]]
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*** [[Tiso_gene_18478]]
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** 2 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[UDPREDUCT-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_9915]]
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*** [[Tiso_gene_9916]]
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−
*** [[Tiso_gene_10138]]
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−
*** [[Tiso_gene_10617]]
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−
** 6 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DCTP-DEAM-RXN DCTP-DEAM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-723 RXN0-723]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-724 RXN0-724]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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{{#set: right end position=4327}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY0-166 PWY0-166]
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{{#set: transcription direction=POSITIVE}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: left end position=470}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: centisome position=8.665192    }}
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{{#set: common name=superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)}}
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{{#set: reaction associated=GCVT-RXN|RXN66-577|SARCOSINE-DEHYDROGENASE-RXN}}
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{{#set: reaction found=12}}
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{{#set: pathway associated=PWY-4722|CRNFORCAT-PWY|PWY-3661-1|GLYCLEAV-PWY}}
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{{#set: total reaction=17}}
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{{#set: completion rate=71.0}}
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Latest revision as of 20:26, 21 March 2018

Gene Tiso_gene_14788

  • right end position:
    • 4327
  • transcription direction:
    • POSITIVE
  • left end position:
    • 470
  • centisome position:
    • 8.665192
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14788&oldid=41588"