Difference between revisions of "Tiso gene 15060"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [h...")
 
(Created page with "Category:Gene == Gene Tiso_gene_15060 == * right end position: ** 4815 * transcription direction: ** POSITIVE * left end position: ** 305 * centisome position: ** 5.798479...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] ==
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== Gene Tiso_gene_15060 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 4815
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.1.1.42 EC-1.1.1.42]
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** 305
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* centisome position:
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** 5.798479   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.7.11.24-RXN]]
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** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 D-threo-isocitrate[c] '''+''' 1 NADP+[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 CO2[c] '''+''' 1 NADPH[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_18262]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10809]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''9''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=4815}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267]
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{{#set: transcription direction=POSITIVE}}
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* PIR:
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{{#set: left end position=305}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759]
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{{#set: centisome position=5.798479    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43294 A43294]
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{{#set: reaction associated=2.7.11.24-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43934 A43934]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49341 A49341]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54756 A54756]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55591 A55591]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B49341 B49341]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64523 C64523]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81399 C81399]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCBYIS DCBYIS]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCECIS DCECIS]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69330 G69330]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64389 H64389]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81877 H81877]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H86708 H86708]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40382 I40382]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40719 I40719]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4600 JC4600]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S28423 S28423]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33612 S33612]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33859 S33859]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S47013 S47013]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51419 S51419]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57499 S57499]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62921 S62921]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S65065 S65065]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74684 S74684]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04355 T04355]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04356 T04356]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07402 T07402]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09619 T09619]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39058 T39058]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P16100 P16100]
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** [http://www.uniprot.org/uniprot/P33198 P33198]
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** [http://www.uniprot.org/uniprot/P41561 P41561]
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** [http://www.uniprot.org/uniprot/P41562 P41562]
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** [http://www.uniprot.org/uniprot/P50214 P50214]
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** [http://www.uniprot.org/uniprot/P41560 P41560]
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** [http://www.uniprot.org/uniprot/P56063 P56063]
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** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3]
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** [http://www.uniprot.org/uniprot/P21954 P21954]
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** [http://www.uniprot.org/uniprot/P08200 P08200]
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** [http://www.uniprot.org/uniprot/O29610 O29610]
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** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7]
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** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4]
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** [http://www.uniprot.org/uniprot/P39126 P39126]
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** [http://www.uniprot.org/uniprot/P50216 P50216]
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** [http://www.uniprot.org/uniprot/P50215 P50215]
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** [http://www.uniprot.org/uniprot/Q04467 Q04467]
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** [http://www.uniprot.org/uniprot/P50217 P50217]
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** [http://www.uniprot.org/uniprot/P41939 P41939]
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** [http://www.uniprot.org/uniprot/P48735 P48735]
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** [http://www.uniprot.org/uniprot/P53982 P53982]
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** [http://www.uniprot.org/uniprot/P50218 P50218]
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** [http://www.uniprot.org/uniprot/O65853 O65853]
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** [http://www.uniprot.org/uniprot/Q40345 Q40345]
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** [http://www.uniprot.org/uniprot/O14254 O14254]
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** [http://www.uniprot.org/uniprot/O75874 O75874]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.1.1.42}}
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{{#set: gene associated=Tiso_gene_18262|Tiso_gene_10809}}
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{{#set: in pathway=FERMENTATION-PWY|PWY-5913|PWY-6549|PWY-7268|P23-PWY|P105-PWY|PWY-6969|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|TCA}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:14, 21 March 2018

Gene Tiso_gene_15060

  • right end position:
    • 4815
  • transcription direction:
    • POSITIVE
  • left end position:
    • 305
  • centisome position:
    • 5.798479
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15060&oldid=47072"