Difference between revisions of "Tiso gene 15066"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11484 RXN-11484] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Gene == Gene Tiso_gene_15066 == * right end position: ** 5231 * transcription direction: ** POSITIVE * left end position: ** 134 * centisome position: ** 2.548982...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11484 RXN-11484] ==
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== Gene Tiso_gene_15066 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5231
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.3.1.47 EC-2.3.1.47]
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** POSITIVE
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* left end position:
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** 134
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* centisome position:
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** 2.5489824   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.2.1.21-RXN]]
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** 1 [[Pimeloyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[8-AMINO-7-OXONONANOATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a pimeloyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 L-alanine[c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 8-amino-7-oxononanoate[c] '''+''' 1 CO2[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-10769]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_3555]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN-10773]]
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* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519]
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** Source: [[annotation-in-silico_annotation]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-7147]], 8-amino-7-oxononanoate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7147 PWY-7147]
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** Source: [[annotation-experimental_annotation]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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* Reaction: [[RXN-13602]]
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* Category: [[orthology]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** Assignment: ec-number
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*** Tool: [[pantograph]]
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-13603]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14179]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-5341]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-8036]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9674]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-3121]]
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* [[PWY-6002]]
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* [[PWY-6788]]
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* [[PWY-5176]]
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* [[PWY-7092]]
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* [[PWY-7091]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5231}}
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{{#set: ec number=EC-2.3.1.47}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: gene associated=Tiso_gene_3555}}
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{{#set: left end position=134}}
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{{#set: in pathway=PWY-6519|PWY-7147}}
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{{#set: centisome position=2.5489824    }}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction associated=3.2.1.21-RXN|RXN-10769|RXN-10773|RXN-13602|RXN-13603|RXN-14179|RXN-5341|RXN-8036|RXN-9674}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: pathway associated=PWY-3121|PWY-6002|PWY-6788|PWY-5176|PWY-7092|PWY-7091}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 20:50, 21 March 2018

Gene Tiso_gene_15066

  • right end position:
    • 5231
  • transcription direction:
    • POSITIVE
  • left end position:
    • 134
  • centisome position:
    • 2.5489824
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15066&oldid=44107"