Difference between revisions of "Tiso gene 1537"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.12-RXN 2.4.2.12-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nicotinamide_phosphor...")
(Created page with "Category:Gene == Gene Tiso_gene_1537 == * right end position: ** 1729 * transcription direction: ** POSITIVE * left end position: ** 149 * centisome position: ** 0.6363442...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.12-RXN 2.4.2.12-RXN] ==
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== Gene Tiso_gene_1537 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1729
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* common name:
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* transcription direction:
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** nicotinamide_phosphoribosyltransferase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.4.2.12 EC-2.4.2.12]
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** 149
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* centisome position:
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** 0.6363442   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.1.1.64-RXN]]
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** 1 [[PRPP]][c] '''+''' 1 [[NIACINAMIDE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[PPI]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 5-phospho-α-D-ribose 1-diphosphate[c] '''+''' 1 nicotinamide[c] '''+''' 1 H+[c] '''=>''' 1 β-nicotinamide D-ribonucleotide[c] '''+''' 1 diphosphate[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[CARBOXYLESTERASE-RXN]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: automated-name-match
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* [[Tiso_gene_8186]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[RETINYL-PALMITATE-ESTERASE-RXN]]
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_8411]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-10711]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_8410]]
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*** Assignment: automated-name-match
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* Reaction: [[RXN-10767]]
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* [[NAD-BIOSYNTHESIS-III]], NAD biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=NAD-BIOSYNTHESIS-III NAD-BIOSYNTHESIS-III]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** Assignment: automated-name-match
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== Reconstruction information  ==
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** Source: [[orthology-esiliculosus]]
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* [[orthology]]:
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* Reaction: [[RXN-12252]]
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** [[pantograph]]:
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** Source: [[annotation-in-silico_annotation]]
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*** [[creinhardtii]]
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*** Assignment: automated-name-match
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* [[annotation]]:
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** Source: [[orthology-esiliculosus]]
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** [[pathwaytools]]:
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* Reaction: [[RXN-12575]]
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*** [[in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXNQT-4366]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-6857]]
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* [[PWY-6303]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1729}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16149 16149]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=149}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01271 R01271]
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{{#set: centisome position=0.6363442    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=3.1.1.64-RXN|CARBOXYLESTERASE-RXN|RETINYL-PALMITATE-ESTERASE-RXN|RXN-10711|RXN-10767|RXN-12252|RXN-12575|RXNQT-4366}}
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{{#set: common name=nicotinamide_phosphoribosyltransferase}}
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{{#set: pathway associated=PWY-6857|PWY-6303}}
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{{#set: ec number=EC-2.4.2.12}}
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{{#set: gene associated=Tiso_gene_8186|Tiso_gene_8411|Tiso_gene_8410}}
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{{#set: in pathway=NAD-BIOSYNTHESIS-III}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 21:13, 21 March 2018

Gene Tiso_gene_1537

  • right end position:
    • 1729
  • transcription direction:
    • POSITIVE
  • left end position:
    • 149
  • centisome position:
    • 0.6363442
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1537&oldid=46973"